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60 protocols using fura red

1

Intracellular Calcium Measurement in Pre-B Cells

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For measurement of intracellular calcium, non-adherent and adherent WT and IkE5Δ/Δ pre-B cells were stained with Fura-red (Life technologies) as per manufacturer's protocol. For calcium flux, cells were harvested into staining buffer that contained 25mM Hepes (pH 7.2), 125 mM NaCl, 5mMKCl, 1mM Na2HPO4, 0.1% glucose and 0.5mM MgCl2, 1 mMCaCl2 and 0.1g BSA just prior to use. Calcium green (Life technologies) and Fura-red were added for 30 minutes at 37°C. Cells were washed twice and re-suspended in staining buffer and placed on ice. Just prior to analysis on FACSCanto™ (BD), the cells were equilibrated to 37°C. Data was acquired for 30 seconds and then pulsed with anti-IgM antibody or ionomycin and acquired for additional indicated time points. Data was analyzed using kinetics platform on FlowJo software (Tree Star).
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Intracellular Calcium Measurement in Pre-B Cells

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For measurement of intracellular calcium, non-adherent and adherent WT and IkE5Δ/Δ pre-B cells were stained with Fura-red (Life technologies) as per manufacturer's protocol. For calcium flux, cells were harvested into staining buffer that contained 25mM Hepes (pH 7.2), 125 mM NaCl, 5mMKCl, 1mM Na2HPO4, 0.1% glucose and 0.5mM MgCl2, 1 mMCaCl2 and 0.1g BSA just prior to use. Calcium green (Life technologies) and Fura-red were added for 30 minutes at 37°C. Cells were washed twice and re-suspended in staining buffer and placed on ice. Just prior to analysis on FACSCanto™ (BD), the cells were equilibrated to 37°C. Data was acquired for 30 seconds and then pulsed with anti-IgM antibody or ionomycin and acquired for additional indicated time points. Data was analyzed using kinetics platform on FlowJo software (Tree Star).
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Intracellular Calcium Signaling in B Cells

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Intracellular Ca2+ influx was measured using FuraRed (FuraRed, cell permeant; Thermo Fisher Scientific). A total of 1x106 PBMCs from the patient and HDs were incubated with 1 μM Fura Red-AM in loading buffer (Hank’s balanced salt solution medium supplemented with 5% fetal calf serum) at 30 °C for 30 min in the dark (20 (link)). To analyze the B cells, during the final 10 min the cells were stained with CD19 APC (BD Biosciences). Cells were then washed and resuspended in loading buffer and then warmed to 37 °C for 5 min prior to acquisition. A baseline was recorded for 60 s, followed by stimulation of the BCR with 35 μg/mL anti-IgM (F(ab)2 anti-Human IgM; Southern Biotech). The cells were then stimulated with 5 μg/mL ionomycin (Sigma) to measure maximum Ca2+ signaling. Data were acquired with a FACS Canto II flow cytometer (BD Biosciences), and data analysis was performed with the use of FlowJo software (Flow-Jo LLC).
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Calcium Imaging of Isolated Islets

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Isolated islets were loaded with 3μM Rhod-2 (Invitrogen), in imaging medium (125mM NaCl, 5.7mM KCl, 2.5mM CaCl2, 1.2mM MgCl2, 10mM Hepes, 2mM glucose, and 0.1% BSA, pH 7.4) for 45 minutes at room temperature, and were held in polymdimethylsiloxane PDMS microfluidic devices [85 (link)] maintained at 37°C. Rhod-2 fluorescence was imaged on a spinning disk confocal microscope (Marianas, 3I), excited at 561nm using an OPSL sapphire laser, with a 580-655nm band-pass filter for emission; or imaged on a confocal microscope (LSM780, Zeiss) excited at 561nm using a diode-pumped solid-state laser, with a 570-645nm band-pass selection for emission. A small sub-set of isolated islets were loaded with 4μM FuraRed (Invitrogen) for 90 minutes at room temperature, and imaged on a spinning disk confocal microscope, excited at 488nm using a diode-pumped solid-state laser, with a 580-655nm band-pass filter for emission. GFP fluorescence was excited at 488nm using a Ar+ laser line (LSM780) or diode-pumped solid-state laser (Marianas), with a 495-555nm band-pass selection for emission. Images were acquired 1/sec, 10 minutes after elevating glucose concentration (2-20mM). Microscope settings (integration time, scan time, gain, laser power) were constant for all images collected within the same day.
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Calcium Flux Assay in T Cells

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2.5 × 106 splenocytes were resuspended in HBSS (phenol red free) with 1% FBS and 1 mM Ca2+ and Mg2+ plus 10 mM Hepes. Cells were loaded both Fluo-4 (Invitrogen) and Fura-Red (Invitrogen) mix dye for 45 min at 37°C. Cells were washed twice and stained for surface markers, and purified anti-CD3ε (clone 145-2C11; eBioscience) was added to the mix of antibodies. Samples were run at low speed, and purified anti-hamster was added to activate the cells after 30 s of acquisition on the Fortessa X-20 cytometer. Curves show ratio of Fluo-4 mean fluorescence intensity (MFI) and FuraRed MFI over the time. The curves represent the CD8+ CD44hi CD11ahi T cells gated on CD45.1+ CD45.2+ double-positive and CD45.2+ CD45.1 for Foxo1 WT and Foxo1-null cells, respectively.
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Opioid-Induced Intracellular Ca2+ Dynamics

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In order to measure acute opioid-induced changes in Ca2+ levels, cells were incubated for 30 min with Fura Red (Invitrogen), a ratiometric Ca2+ fluorescent indicator [78 (link),79 (link)] stimulated with 750 nM opioids and Ca2+ levels were monitored using sequential, i.e., dual-track time-lapse CLSM imaging. In the first track, the 488 nm line of the Ar/ArKr laser was used to excite eGFP and Fura Red. The eGFP signal was collected using the band pass 505-530 nm emission filter, and the Fura Red signal was collected using the long pass 680 nm emission filter. In response to changes in Ca2+ concentrations, the excitation wavelength of Fura Red shifts from 472 nm at low Ca2+ concentration to 436 nm at high Ca2+ concentration [78 (link)]. As a result, the intensity of the Fura Red fluorescence signal decreases when intracellular Ca2+ levels increase and increases as they fall again. In the second track, the 543 nm HeNe laser was used to excite Tomato, and fluorescence was collected using the band pass 580–620 nm emission filter. The images were collected every 30 s for 40 min (in some cases up to 80 min). The pixel dwell time was 51.2 µs, and the images were collected without averaging.
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Dendritic Cell Maturation and Calcium Signaling

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Micro-channels were coated with fibronectin (Sigma) or PLL(20)-g[3.5]-PEG(2) (SuSoS Chemical). For myosin light chain kinase inhibition, cells were incubated with different concentrations of ML7 from Calbiochem as indicated for 16 h. For Ca2+ experiments, Oregon Green BAPTA 1-AM, FuraRed, BAPTA (Invitrogen), and Thapsigargin from Calbiochem were used. For IP3R inhibition, 5 μM xestospongin C from Calbiochem was used. For dendritic cell maturation, we incubate the cells 24 h with 100 ng/ml LPS (Sigma). For flow cytometry analysis, we used a homemade 24G2 anti-Fc Receptor antibodies, rabbit serum from Agro Bio as a control, and anti-CD11c (HL3 clone), anti-IAbb (AF6-120.1 clone), and anti-CD86 (GL1 clone). For immunoblot, we used anti-IP3R type 1 (Abcam ab5804), anti-IP3R type 3 (610313 BD Transduction Laboratories), anti-phospho-myosin light chain (Rockland 600-401-416), and anti-actin (Millipore). For lentivirus production, HEK cells were transfected using GeneJuice (Novagen).
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8

Measuring Cytoplasmic Ca2+ in DC-iNKT Interactions

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Cytoplasmic Ca2+ levels in DCs were assessed using three different approaches. (1) Time-lapse fluorescence microscopy was performed using a 1:1 ratio of Fluo-4-labeled DCs and CMTPX-labeled iNKT cells that were allowed to settle onto poly-L-lysine-coated glass slides. Microscopic analysis was performed in a 37°C and 5% CO2 chamber, with images taken by a Nikon Ti-Eclipse inverted wide-field microscope every 30 s. Data analysis was carried out using NIS Elements software (Nikon) version 4.13.04. (2) DCs were labeled with Fluo-4 and mixed with a 1:1 ratio of unlabeled iNKT cells, and 2 × 105 cells were added per well of a 96-well black-walled plate (Costar) and analyzed for 30–60 min at 37°C using a Synergy HT fluorescence plate reader (BioTek Instruments). (3) DCs were labeled with Fluo-4 and FuraRed (Invitrogen) and mixed at a 1:1 ratio with unlabeled iNKT cells. The cells were spun down for 2–3 min to initiate contact, incubated at room temperature for 2 min, and then vortexed and analyzed using a BD LSRII flow cytometer.
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9

Calcium Imaging of Isolated Glomeruli

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The laser scanning confocal microscope system Nikon A1-R was used to detect [Ca2+]i transients. Samples were imaged using 20 × and 60 × objective lenses: Plan Apo 20x/NA 0.75 and 60x/NA 1.4 Oil. Open-source software ImageJ was used for analysis. Changes in [Ca2+]i concentration in isolated glomeruli were estimated by fluorescent dyes: Fluo 4 (ex. 488 em. 520/20 nm; #20,190,588, Invitrogen, OR) and Fura Red (ex. 488 em. > 600 nm; #21,046, AAT Bioquest, Inc, CA).
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10

Calcium Signaling in B Cell Activation

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A20 or A20 D1.3 B cells that had been transfected with siRNA, or treated with DMSO or LIMKi3, were washed twice with Hanks' Balanced Salt Solution (HBSS) containing 10 mM HEPES and resuspended to 107 per mL before adding 2 μM Fura Red (Invitrogen, #F3021), 1 μM Fluo-4 (Invitrogen, #F14201), and 0.02% Pluronic F-127 (Invitrogen, #P3000MP). The cells were then incubated for 30 min at room temperature protected from light, washed with HBSS/10 mM HEPES/2% FCS, resuspended to 107/mL, and incubated for an additional 20 min protected from light. Flow cytometry was performed using an LSRII-561 cytometer (Becton Dickinson Biosciences). For each sample, 1–3 × 106 cells were pelleted and resuspended in 0.5 mL mHBS, with paired samples having similar number of cells. Samples were analyzed for 1 min to establish baseline values before adding either goat anti-mouse IgG (Jackson ImmunoResearch, #115-005-008, 20 μg/mL) for A20 B cells or goat anti-mouse IgM (Jackson ImmunoResearch, #115-005-020, 20 μg/mL) for A20 D1.3 B cells, and then analyzing the cells for an additional 5 min. Ionomycin (1 μM; Invitrogen, # I24222) was added to saturate the Ca2+-sensing dyes and the cells were analyzed for an additional 1 min. Data were analyzed using FlowJo software (Treestar Inc.), gating on single intact cells using forward and side scatter.
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