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Alexa flour 488 donkey anti mouse

Manufactured by Thermo Fisher Scientific
Sourced in Denmark, United States

Alexa Fluor 488 Donkey Anti-Mouse is a fluorescently labeled secondary antibody used for detection and visualization purposes in various biological applications. It is designed to bind to mouse primary antibodies, enabling the detection and localization of target antigens labeled with mouse antibodies.

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8 protocols using alexa flour 488 donkey anti mouse

1

Immunofluorescence Assay for α-SMA and Smad2/3

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Cells were fixed with ice-cold methanol for 15 min. Cells were then washed and blocked in 5% normal donkey Serum (Jackson Research Laboratories, Inc., West Grove, PA) for 1 h at room temperature, followed by mouse monoclonal αSMA antibody (1:200 dilution, Dako, Carpinteria, CA) for 90 min. Cells were rinsed and then incubated in secondary antibodies Alexa Flour ® 488 donkey anti-mouse (Invitrogen, Eugene, OR) for 1 h at room temperature. The cells were washed three times with PBS, mounted in Vectashield containing 4′−6-diamidino-2-phenylindole (DAPI; Vector Laboratories), and photographed with a Leica DM 4000B fluorescent microscope (Leica, place, state, country) equipped with a digital camera (SpotCam RT KE).
For Smad2/3 staining, HCF cells (1.8 × 103 in 300 μl medium/well) were grown to sub-confluency in each well of 4-well Nunc Lab-Tec chamber slides (Nunc, Rochester, NY). Cells were treated with or without TRAM34 (25 μM) for 24 h. The cultures were washed and treated with TGFβ−/+ (5 ng/ml) for 1 h. Cells were fixed with ice-cold methanol for 15 min and immunohistochemistry for smad2/3 protein was performed using mouse monoclonal anti-smad2/3 antibody (1:100 dilution in PBS; Santa Cruz Biotechnology, Santa Cruz, CA) followed by the incubation with secondary antibody Alexa Flour® 488 donkey anti-mouse (Invitrogen, Eugene, OR) was used, respectively.
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2

Dual Immunofluorescence Staining of GBM

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Double immunofluorescence staining was performed on 3 μm paraffin sections from 10 GBMs. The sections were deparaffinised and endogenous peroxidase activity quenched followed by Heat-Introduced Epitope Retrieval, HIER. The stainings were performed using a DAKO Autostainer Universal Staining System. When performing CD133/Oct-4 double immunofluorescence stainings the tissue sections were first incubated with CD133 antibody (W6B3C1, Miltenyi Biotec, Germany) and CD133 detected by CSA II Biotin-free Tyramide Signal Amplification System (DAKO, Denmark). A second round of HIER with T-EG was performed, sections incubated with OCT-4 and detection performed by TSA Plus Fluorescein system (PerkinElmer, Denmark). The cover slips were mounted using Vector mounting medium with DAPI (Vector, Denmark). When performing the nestin/Oct-4 double immunofluorescence staining, sections were first incubated with Oct-4 followed by detection with TSA Plus Fluorescein system (PerkinElmer, Denmark). After a second round of HIER, sections were incubated with nestin (196908, R&D Systems, UK) and detection performed with Alexa flour 488 Donkey Anti mouse (Invitrogen, Denmark). The cover slips were mounted as above. Co-expression was visualised using a Leica DM 50000B microscope with DAPI (Vysis), FITC and Rhodamine filters (Leica) at 400x magnification.
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3

Apoptosis and Proliferation Profiling in GBM

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Immunohistochemistry was conducted to analyze the protein expression of apoptotic marker active caspase 3 and proliferation marker Ki67 in GBM brain tumor xenografts. Briefly, the brains were removed, fixed in PFA, submerged in 30% sucrose solution, frozen in OCT media, cryo-sectioned (10 µm) and then subjected to immuno-staining using following primary and secondary antibodies. Rabbit cleaved caspase 3 (9661S; Cell Signaling Technology, Danvers, MA, USA), Ki67 (9449S; Cell Signaling Technology, Danvers, MA, USA), Alexa flour 555 donkey anti rabbit (A31572; Invitrogen, Waltham, MA, USA) and Alexa flour 488 donkey anti mouse (A21202; Invitrogen) were used. Images were taken on Zeiss LSM 880 confocal microscope at 20× magnification.
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4

Immunostaining of MeCP2 and β-Endorphin in Brain

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Immunostaining for MeCP2 and β-endorphin were performed as described previously [17] (link). Brain sections (20 µm thickness) were cut on a cryostat (Leica) and collected on pre-chilled glass slides. These sections were double stained for MeCP2 (1∶500) and β-endorphin (1∶200) antibodies. The primary antibodies used were mouse anti MeCP2 (Abcam, Cambridge, MA) and rabbit anti β-endorphin (Bachem, Sam Carlos, CA). Secondary antibodies used in this study were Alexa-Flour 488 donkey anti-mouse (2 mg/ml; Invitrogen, Grand Island, NY) and Alexa Flour 594 donkey anti-rabbit IgG (2 mg/ml; Invitrogen, Grand Island, NY). After staining, pictures were taken using a confocal microscope with a 20× objective (Nikon EZ-C1 3.60 build 770, Gold version; Melville, NY). Total number of β-endorphin cells as well as total number of β-endorphin cells, located on the right and left side of the third ventricle, that were positive for MeCP2 were counted. The experimenters were blind to the experimental treatment group of the section during counting.
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5

Immunostaining Retinal Sections

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Eight-micron retinal sections were prepared using a Leica CM 3050 S cryostat. Immunofluorescence was performed as previously described 4 (link), 5 (link), 70 (link). Primary antibodies used in this study: Rabbit anti-GFP, Thermo Fisher, Cat. # A6455 (1/1,000); mouse anti-PCNA Sigma, Cat# P8825 (1/500 dilution); mouse anti-4C4 (1/200 dilutions; gift from J. Parent lab, UM); rabbit anti-HuC/D, Abcam, Cat# ab210554 (1/500); mouse anti-glutamine synthetase (GS), Millipore Sigma, Cat# MAB302 (1/500); mouse anti-zpr1, ZIRC, Cat# ZDB-ATB-081002-43 (1/500). Secondary antibodies: Alexa Flour 555 Donkey anti Mouse-IgG (H+L), Thermo Fisher Cat. # A31570 (1/500); Alexa flour 555 Donkey anti Rabbit IgG (H+L), Thermo Fisher, Cat # A31572 (1/500); Alexa Flour 488 donkey anti mouse Thermo Fisher Cat. # A21202 (1/500); Alexa Flour 488 goat anti rabbit Thermo Fisher Cat. # A11008 (1/500).
An in situ Cell Death Fluorescein Kit (Millipore Sigma, Cat. # 11684795910) was used to detect apoptotic cells.
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6

Zebrafish Immunofluorescence: Detailed Protocol

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Zebrafish samples were prepared for immunofluorescence as previously described (Fausett and Goldman, 2006 (link); Ramachandran et al., 2010a (link); Ramachandran et al., 2010a (link)). Primary antibodies used in this study: anti-pSmad3, Abcam Cat. # ab52903 (1/200); Zpr-1 and Zn-5, Zebrafish International Resource Center (1/500 and 1/1000, respectively); anti-HuC/D, Abcam, Cat. #ab210554 (1/500); anti-PKCβ1, Santa Cruz Biotechnology, Cat. #SC-8049 (1/200); anti-glutamine synthetase (GS), Sigma-Aldrich, Cat. #MAB302 (1/500); anti-SOX9, EMD Millipore, Cat. #AB5535 (1/500); anti-BrdU, Thermo Fisher, Cat. # MA 1–82088 (1/500) and Cat. # B35128 (1/500, clone MoBu-1 for co-staining with EdU Click-It chemistry). Secondary antibodies: Alexa Flour 555 Donkey anti Mouse-IgG (H+L), Thermo Fisher Cat. # A31570 (1:500); Alexa flour 555 Donkey anti Rabbit IgG (H+L), Thermo Fisher, Cat # A31572 (1:500); Alexa flour 555 Donkey anti Sheep IgG (H+L) Thermo Fisher Cat #A21436. Cy3, Jakson Immuno research labs, Cat #712-166-150 (1:500); Alexa Flour 488 donkey anti mouse Thermo Fisher Cat. # A21202 (1:500); Alexa Flour 488 goat anti rabbit Thermo Fisher Cat. # A11008 (1:500); Cy5 goat anti mouse, Thermo Fisher Cat. # A10524 (1:500); and Alexa Flour 647 goat anti rabbit Thermo Fisher Cat # A21244 (1:500). In situ hybridization was performed as described previously (Barthel and Raymond, 2000 (link)).
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7

Zebrafish Immunofluorescence Staining Protocol

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Zebrafish samples were prepared for immunofluorescence as previously described (Fausett & Goldman, 2006 (link); R. Ramachandran et al., 2010a (link); R. Ramachandran, Reifler, A., Parent, J.M and Goldman, D., 2010 (link)). Primary antibodies used in this study: Rabbit anti-GFP, Thermo Fisher, Cat. # A6455 (1/1000); Mouse anti-mCherry, Abcam, Cat. # ab125096 (1:500); and mouse anti-glutamine synthetase (GS), Sigma-Aldrich, Cat. #MAB302 (1/500). Secondary antibodies used were: Alexa Flour 555 Donkey anti Mouse-IgG (H+L), Thermo Fisher Cat. # A31570 (1:500); Alexa flour 555 Donkey anti Rabbit IgG (H+L), Thermo Fisher, Cat # A31572 (1:500); Alexa Flour 488 donkey anti mouse Thermo Fisher Cat. # A21202 (1:500); Alexa Flour 488 goat anti rabbit Thermo Fisher Cat. # A11008 (1:500).
We used an in situ Cell Death Fluorescein Kit (Millipore Sigma, Cat. # 11684795910) to detect apoptotic cells.
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8

Zebrafish Immunofluorescence Staining Protocol

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Zebrafish samples were prepared for immunofluorescence as previously described (Fausett & Goldman 2006 , Ramachandran et al 2010a , Ramachandran 2010) . Primary antibodies used in this study: Rabbit anti-GFP, Thermo Fisher, Cat. # A6455 (1/1000); Mouse anti-mCherry, Abcam, Cat. # ab125096 (1:500); and mouse anti-glutamine synthetase (GS), Sigma-Aldrich, Cat. #MAB302 (1/500). Secondary antibodies used were: Alexa Flour 555 Donkey anti Mouse-IgG (H+L), Thermo Fisher Cat. # A31570 (1:500); Alexa flour 555 Donkey anti Rabbit IgG (H+L), Thermo Fisher, Cat # A31572 (1:500); Alexa Flour 488 donkey anti mouse Thermo Fisher Cat. # A21202 (1:500); Alexa Flour 488 goat anti rabbit Thermo Fisher Cat. # A11008 (1:500).
We used an in situ Cell Death Fluorescein Kit (Millipore Sigma, Cat. # 11684795910) to detect cells undergoing apoptosis.
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