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6 protocols using a 21427

1

Immunofluorescence Analysis of Telomeric Proteins

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Cells grown on glass coverslips were fixed in 4% paraformaldehyde/PBS for 15 min, then permeabilized with 0.1% triton-X100/PBS at 37°C for 30 min, and finally blocked with 5% goat serum/PBS at 37°C for 3 h. Immunofluorescence was performed using standard methods, and the slides were incubated alternately with BG4 (80 ng/μL), anti-FLAG antibody (#2368, Cell Signaling Technology), γH2AX antibody (#9718, Cell Signaling Technology), TRF2 antibody (ab13579, Abcam), or POT1 antibody (ab21382, Abcam) at 37°C for 3 h. The glass coverslips were washed six times with blocking buffer and were then incubated with anti-rabbit Alexa 488-conjugated antibody (A21206, Life Technology), anti-mouse Alexa 555-conjugated antibody (A21427, Life Technology), and 2 μg/mL of 4′,6-diamidino-2-phenylindole (DAPI, Invitrogen) at 37°C for 3 h. The glass coverslips were again washed six times with blocking buffer, and then, digital images were recorded using an LSM710 microscope (Zeiss, GER) and analyzed with ZEN software. Fifty nuclei were counted in each group, and the s.e.m. was calculated from three replicates. Frequency distribution graphs were plotted using GraphPad Prism (GraphPadSoftware Inc.).
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2

Immunofluorescence Analysis of Telomere Proteins

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Cells grown on glass coverslips were fixed in 4% paraformaldehyde/PBS for 15 min and then permeabilized with 0.1% Triton-X 100/PBS at 37°C for 30 min. Then, the cells were finally blocked with 5% goat serum/PBS at 37°C for 3 h. Immunofluorescence was performed using standard methods, and the slides were incubated alternately with BG4 (40 ng/μl), anti-FLAG antibody (#2368, Cell Signaling Technology), γH2AX antibody (#9718, Cell Signaling Technology; ab26350, Abcam), TRF2 antibody (ab13579, Abcam), TRF1 antibody (ab1423, Abcam) or POT1 antibody (ab21382, Abcam) at 37°C for 3 h. The glass coverslips were washed six times with blocking buffer and were then incubated with the anti-rabbit Alexa 488-conjugated antibody (A21206, Life Technology), the anti-mouse Alexa 555-conjugated antibody (A21427, Life Technology), and 0.5 μg/ml of DAPI (Invitrogen) at 37°C for 3 h. The glass coverslips were again washed six times with blocking buffer, and then, digital images were recorded using a LSM710 microscope (Zeiss, GER) and analyzed with ZEN software. Fifty nuclei were counted in each group.
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3

Multicolor Immunofluorescence Imaging of NCI-H1299 Cells

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NCI-H1299 cells were fixed in 4% (w/v) paraformaldehyde at room temperature for 30 min and permeablized in 0.5% (w/v) Triton X-100, followed by incubation with primary and secondary antibodies for 1 h at room temperature sequentially. Anti-HA serum (AH158; Beyotime Institute of Biotechnology, Haimen, China) with 1:200 was used for the control and Alexa 488-conjugated secondary antibody (1:500, A-11017; Invitrogen; Thermo Fisher Scientific, Inc.) were used to probe for the NS1 protein at room temperature for 1 h. Following protein staining, anti-cytochrome c monoclonal antibody (1:1,000, BD556432; BD Biosciences, Franklin Lakes, NJ, USA) and Alexa 555-conjugated secondary antibody (1:500, A-21427; Invitrogen; Thermo Fisher Scientific, Inc.) were utilized to probe the NCI-H1299 cellular morphology. Finally, 4′,6-diamidino-2-phenylindole (DAPI, 1:1,000, D1306; Invitrogen; Thermo Fisher Scientific, Inc.) was used to dye the cell nucleus at room temperature for 1 h. Triple-fluorescence stained cells were observed with a confocal microscope at a high-power magnification of ×100 (FV10-ASW, version 01.07.03.00; Olympus Corporation, Tokyo, Japan).
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4

Immunofluorescence Analysis of Hematopoietic Markers

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Cells were seeded on gelatin-coated circular micro cover glass (d = 18 mm, Matsunami, Japan) submerged in a 60-mm dish (TPP, Switzerland). After 7 days of treatment with/without 200 µM CoCl2, cells were washed with phosphate buffered saline (PBS) 3 times and then fixed with 4% paraformaldehyde (Nacalai-Tesque) at room temperature for 20 min followed by blocking with 10% FBS in PBS containing 0.05% Tween 20 (Nacalai-Tesque) for 1 h at room temperature. The cells were then incubated with anti-CD34 rabbit polyclonal antibody (H-140) (1:50, sc9095, Santa Cruz, CA) or anti-mouse TER-119/erythroid cells rat monoclonal IgG (1:100, 116,201, BioLegend, CA) diluted with blocking solution overnight at 4 °C. After PBS washes, anti-rabbit IgG linked with Alexa Fluor 555 (1:1000, A21427, Invitrogen, CA) was used to detect anti-CD34 antibody and anti-rat IgG linked with Texas red (1:1000, T6392, Invitrogen) was used to detect anti-TER-119 antibody. Incubation with the secondary antibody was performed for 1 h at room temperature. After PBS washes, the samples were prepared on glass slides (Matsunami) using VECTASHIELD Mounting Medium with 4', 6-diamidino-2-phenylindole (DAPI) (Vector Laboratories, CA). Images were taken using an inverted light microscope equipped with a fluorescence light device (IX-80, Olympus, Japan).
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5

Immunophenotyping of Neural Cell Types

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Cells (1 × 106) were washed twice with HEPES-buffered saline, treated with Accutase (ThermoFisher, A1110501), and fixed for 20 minutes at room temperature in 2.0% PFA. Cell membranes were permeabilized by adding 0.1% TritonX-100 in PBS for 20 minutes at room temperature. Cell pellets were collected and incubated with primary antibodies diluted in blocking solution: mouse anti-Olig2 (1:200; Merck Millipore, MAPN50), mouse anti-beta III tubulin (1:150; Merck Millipore, MAB1637), mouse anti-GFAP (1:200; Merck Millipore, MAB360), rabbit anti-TTR (1:300;; ABBIOTC, 250892) and incubated overnight at 4 °C. After washing, secondary antibodies anti-rabbit Alexa Fluor-488 (Invitrogen, A-11008) or anti-mouse Alexa Fluor-555 (Invitrogen, A-21427;), were diluted in PBS and incubated for 1.5 hours at room temperature. Flow cytometric evaluation was conducted within 5 minutes. Cells were analyzed by flow cytometry using an EPICS XL-MCL FACScan (Becton–Dickinson, Mountain View, CA, United States).
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6

Antibody Staining and Western Blotting

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The primary antibodies α-NS3 GTX12452(1 : 200), α-E s4G2 clone Hb119 (1 : 200), and the secondary antibodies rabbit α-mouse AF555 (A-21427, Invitrogen), goat α-rabbit AF594 (A-11012, Invitrogen) were diluted in a PermWash solution. Primary antibodies α-GAPDH (1 : 4000) (A01622, Genescript), α-Flavivirus Glycoprotein (1 : 1500) (Ab214336, Abcam), α-p24 (1 : 1000) (ab9044, Abcam), α-VSV-Glycoprotein (VSV-G) (1 : 1000) (V-5507, Sigma) and secondary α-goat IgG HRP (1 : 4000) (A8919, Sigma), α-mouse immunoglobulins HRP (P0260, Dako) were diluted on 10 % Non-Fat-Dried Milk in 1X PBS 0.1 % Tween.
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