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16 protocols using anti mmp2 antibody

1

Western Blot Analysis of TRIM59 and Associated Signaling Proteins

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The RIPA protein lysis buffer (Beyotime, Shanghai, China) was used to split the proteins in tissues or cells, and the protein concentration was measured using a bicinchoninic acid disodium kit (Beyotime). An equivalent amount of cell lysate was separated on a 10% SDS-PAGE gel and transferred onto polyvinylidene difluoride membranes. The membranes were subsequently sealed, and anti-TRIM59 antibody (1: 5000) was added. GAPDH (1: 10 000; Multisciences, Hangzhou, China) as an internal reference. The membranes were incubated with goat anti-rabbit IgG secondary antibody (1: 5000; Bioworld Technology, lnc., St. Louis Park, MN, USA). The intensity of protein bands was analyzed with Image J software (National Institutes of Health, Bethesda, MD, USA). Other primary antibodies used in this study included anti-FAK antibody, anti-phospho-FAK, anti-AKT, anti-phospho-AKT, anti-MMP2 antibody, and anti-MMP9 antibody, which were all purchased from Abcam or Santa Cruz Biotechnology (Dallas TX, USA).
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2

Immunohistochemical Analysis of Hepatic Markers

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After deparaffinization, rehydration and antigen-retrieval, hepatic tissue slides (4–7 μm) were blocked by 3% H2O2 for 10 min and incubated with anti-Ki67, anti-p-Smad2/3 and anti-MMP2 antibody (Abcam, Cambridge, MA, USA) at 4 °C overnight. The slides were then stained with horseradish peroxidase (HRP)-labeled IgG (Shanghai Long Island Biotec, Shanghai, China) at 25 °C. Subsequently, the sections were stained with diaminobenzidine (DAB), counterstained with hematoxylin and washed in water. The immunoreactive cells were counted in five visual fields of each section under a 200 × light microscope.
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3

Western Blot Analysis of Protein Targets

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Tissues or cultured cells were lysed in RIPA lysis buffer (Abcam, China) to extract proteins. The protein concentration was determined by using DC Protein Assay Kit (Bio-Rad, China). Equal amount of proteins from each sample was loaded into SDS-polyacrylamide gels for electrophoresis followed by transferring to PVDF membranes (Sigma-Aldrich, China). The membranes were then blocked in 3% BSA blocking buffer for 1 h at room temperature and then incubated with primary antibodies diluted in blocking buffer overnight at 4 °C. Next day, the membranes were washed by TBST three times for 10 min each wash and then incubated with specific secondary antibodies for 2 h at room temperature followed by TBST washes again. Signals were detected via ECL kit. The following antibodies were used in the study: anti-RUNX3 antibody (1:1000, Thermo Fisher Scientific, USA); anti-PER3 antibody (1:1000, Thermo Fisher Scientific, USA); anti-MMP-2 antibody (1:1000, Abcam, USA); anti-MMP-9 (1:1000, Abcam, USA); anti-β-catenin antibody (1:1500, Cell Signaling, USA); anti-GAPDH (1:5000, Abcam, USA).
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4

Immunohistochemical Analysis of Xenografted Tumors

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Xenografted tumors from the mice were excised, fixed in 4% paraformaldehyde for 24 h, and then embedded in paraffin for histological studies. Paraffin-embedded tissues were sectioned into slices of 4-µm thickness for histological studies. Dewaxed and rehydrated tissue sections were subjected to antigen retrieval processes. Upon blocking, the sections were incubated overnight at 4°C with anti-cluster of differentiation (CD) 31 antibody (dilution 1:50; catalogue number JC70; Neomarkers, Fremont, CA, USA) or anti-MMP-2 antibody (dilution 1:200; catalogue number ab37150; Abcam, Cambridge, UK). Negative controls were prepared using PBS instead of the primary antibodies. Upon washing with PBS, the sections were incubated with a goat anti-mouse EnVision kit (Genentech, South San Francisco, CA, USA) for 40 min at 37°C, and then incubated with 3,3′-diaminobenzidine chromogen for 10 min. The slides for CD31-periodic acid-Schiff (PAS; Beijing Zhongshan Jinqiao Biotechnology Co. Ltd., Beijing, China) double staining were then exposed to a 0.5% periodic acid solution for 15 min and subsequently incubated in Schiff solution for 20 min in a dark chamber. Subsequently, the slides were washed with distilled water for 3 min and counterstained with hematoxylin. Multiplication of intensity and percentage scores was utilized to determine the staining index result.
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5

Comprehensive Protein Analysis via Western Blotting

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Total proteins from the cells were extracted with Laemmli buffer, incubated at 90°C for 5 min and centrifuged at 12,000× g for 20 min. Protein concentrations were measured using the BCA method. For the Western blot assay, proteins were separated on 10% sodium dodecyl sulfate (SDS) polyacrylamide gel (SDS-PAGE), transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA), blocked in 5% bovine serum albumin (BSA) with 0.1% Tween 20 in tris buffered saline (TBS) for 1 h at room temperature (RT) and, subsequently, incubated with the following primary antibodies: anti-vimentin antibody (Protein-tech, 1:3,000), anti-E-cadherin antibody (Abcam, 1:3,000), anti-ZO-1 antibody (Proteintech, 1:3,000), anti-MMP-2 antibody (Abcam, 1:3,000), anti-c-Myc antibody (Abcam, 1:3,000) and anti-GAPDH antibody (Proteintech, 1:3,000) overnight at 4°C. Membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (1:2,000, Thermo Fisher Scientific). The resultant bands were visualized using an enhanced chemiluminescence (ECL) detection system (ChemiDoc XRS; Bio-Rad, Hercules, CA, USA) and quantified using Quantity One software (Bio-Rad).
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6

Quantification of Serum and Recombinant MMP-2 by Western Blot

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Serum and recombinant MMP-2 was detected by Western blot. Recombinant proMMP-2 (Calbiochem) was included as a positive control for detection by primary anti-MMP-2 antibodies. Equal volumes of samples were mixed with a reducing sample buffer (150 mM Tris-HCL, pH 6.8, 15% (w/v) SDS, 30% (v/v) glycerol and 10% (v/v) 2-mercaptoethanol), heated at 95 °C for 10 mins and run on a SDS/10%-PAGE. The gel was stained with the Zn-Imidazole reverse stain technique previously described by us50 (link),51 (link). After imaging the gel, the Zn-Imidazole stain was removed from the gel by Zn chelation; i.e., by incubating the gel in 50 mM EDTA/ 1X running buffer (25 mM Tris, 192 mM glycine and 3.4 mM SDS). For Western immunoblotting, the proteins were transferred from the gel onto a 0.2 µm nitrocellulose membrane (BioRad, USA). The membrane was then probed with a rabbit polyclonal anti-MMP-2 antibody (Abcam, cat# ab37150) or a rabbit monoclonal anti-MMP-2 (D2O4T) antibody (CellSignalling, cat# 87809). These primary antibodies were then detected using a horseradish-peroxidase-conjugated goat anti-rabbit secondary antibody (BioRad, USA) and the Amersham ECL Western Blot Detection Reagent (GE Healthcare, cat# RPN2106).
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7

Western Blot Analysis of Fibrosis Markers

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Cells were lysed in the RIPA buffer (Merck Millipore, 20-188, Germany) with complete protease inhibitors (Roche, 5892791001, Swiss) and PhosSTOP phosphatase inhibitor (Roche, 490683700, Swiss). Lysates were centrifugated at 12, 000 rpm for 15 min at 4 C. Supernatants were collected, and the protein concentration was measured using a BCA Protein Assay Kit (Beyotime, P0012, China). Proteins were separated in SurePAGE, Bis-Tris, 10%15 wells (GeneScript, M00666, United States) and transferred onto PVDF membranes (Merck Millipore, IPVH00010, Germany). Then, 5% bovine serum albumin was used to block the membranes for 1 h, followed by incubation with primary antibodies overnight at 4 C, including the anti-fibronectin antibody (1:100, Boster, BM1772, China), anti-α-SMA antibody (1:100, Sigma, 5228, United States), anti-MMP2 antibody (1:100, abcam, ab92536, United Kingdom), anti-TIMP2 antibody (1:100, Santa cruz, sc21735, United States), anti-GAPDH antibody (1:500, CST, 2118s, United States), and anti-αTubulin antibody (1:100, CST, 12351s, United States). Corresponding secondary antibodies were applied at 37 C for 1 h.
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8

Immunohistochemical Analysis of Tumor Markers

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Tumor tissue from nude mice was embedded and cut into 4 μm-thick sections. After microwave oven/3% H2O2 treatment, the following primary antibodies were added: anti-HOXB4 antibody (1:500; Abcam, UK), anti-MMP2 antibody (1:500; Abcam, UK), anti-MMP9 antibody (1:300; Abcam, UK), anti-E-cadherin antibody (1:500; Abcam, UK), and anti-vimentin antibody (1500; Abcam, UK) at 4 °C overnight. The immunohistochemical staining results were collected and scored by professionals.
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9

Immunohistochemical Analysis of TIMP-2, MMP-2, and TGF-β1

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Formalin-fixed and paraffin-embedded tissues were cut into 4-mm thick sections and subjected to immunohistochemistry using En Vision staining, following the manufacturer’s instructions. The sections were initially blocked with 5% BSA and then incubated with specific primary antibodies, including anti-TIMP-2 antibody (1:50, Santa Cruz, CA, USA), anti-MMP-2 antibody (1:200, Abcam Inc, MA, UK), or anti-TGF-β1 antibody (1:150, Boshide Biotech, Wuhan, China). The incubation was performed overnight at 4°C. Subsequently, the sections were incubated with a secondary antibody, goat anti-rabbit immunoglobulin G (Santa Cruz, CA, USA). As a negative control for staining, some tissue sections were incubated with phosphate-buffered saline (PBS) without primary antibodies. For image analysis, the Optical Density (OD) was calculated using Image-Pro Plus 6.0 image processing software based on five randomly chosen microscopic fields.
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10

Sorafenib and SB-3CT Combination Therapy

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Sorafenib (Nexavar®) and SB-3CT (MMP-2 inhibitor) were purchased from Selleck Chemicals (Houston, TX, USA). LY294002 (PI3K inhibitor), MK-2206 (AKT inhibitor), rapamycin (mTOR inhibitor), RG7204 (RAF inhibitor), U0126 (MEK inhibitor), and PD98059 (ERK inhibitor) were obtained from Selleck Chemicals. For in vitro experiments, these reagents were dissolved in dimethyl sulfoxide (DMSO) for long-term storage and then diluted to the working concentration with DMEM. The final DMSO concentration was less than 0.1%. For in vivo experiments, SB-3CT was dissolved in 10% DMSO, and sorafenib was dissolved in a mixture of Cremophor EL/ethanol/ddH2O (1:1:6). Primary antibodies for p/t-PI3K, p/t-AKT, p/t-mTOR, p/t-RAF, p/t-MEK, and p/t-ERK1/2 were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-MMP-2 antibody was purchased from Abcam (Cambridge, UK). The antibody against glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and horseradish peroxidase (HRP)-labeled anti-rabbit secondary antibodies were obtained from CWBIO (Beijing, P.R. China).
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