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Mouse anti tim23

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Mouse anti-TIM23 is an antibody that targets the TIM23 protein, a component of the mitochondrial import inner membrane translocase complex. This antibody can be used for the detection and analysis of TIM23 in various research applications.

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7 protocols using mouse anti tim23

1

Antiviral Autophagy Pathway Analysis

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HEK293 cells, HeLa cells, U2OS cells and Vero cells were cultured in Dulbecco’s modified Eagle medium (Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (Hyclone, South Logan, UT, USA) and antibiotics (100 U ml−1 penicillin and 100 μg ml−1 streptomycin, Invitrogen). Antibodies used in this study for western blot or immunofluorescence assays were as follows: mouse anti-Flag (Sigma, St Louis, MO, USA), rabbit anti-LC3 (Novus, Littleton, CO, USA and MBL, Woburn, MA, USA), mouse anti-TIM23 (BD, Waltham, MA, USA), mouse anti-GAPDH and rabbit anti-Caspase-3 (Sungene Biotech, Tianjin, China), rabbit anti-Myc and rabbit anti-HA (MBL), rabbit anti-ATG5 (Epitomics, Cambridge, MA, USA), and rabbit anti-TOM20, mouse anti-Calnexin, mouse anti-TRAF2 and rabbit anti-TRAF6 (Santa Cruz Biotechnology, Dallas, TX, USA), rabbit anti-Cleaved Caspase-3 (Cell Signalling Technology, Danvers, MA, USA); the antibody against MAVS was produced by our lab [14 (link)]. Mito-TEMPO was purchased from Santa Cruz Biotechnology or Enzo Life Science, Farmingdale, NY, USA. Pyrrolidinedithiocarbamic acid ammonium salt (PDTC), bafilomycin A1 and chloroquine were purchased from Sigma. VSV was propagated in Vero cells.
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2

Mitochondrial Protein Regulation Assay

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Primary antibodies used in this study: rabbit anti-LC3A/B, rabbit anti-Parkin rabbit anti-HSP60 (1:1000, Cell Signaling, products #4108S, #4211S and #12165S , respectively); mouse anti-TIM23 (1:1000, BD Biosciences, product #611222); mouse anti-VDAC1, mouse anti-TOM20, and mouse anti-p62 (Santa Cruz, 1: 500, sc-58649, sc-17764, and sc-28359, respectively); rabbit anti-ATP synthase gamma (1:1000, GeneTex, product #GTX-114275), mouse anti-Actin (1:3000, Genescript, product #A00702) and rabbit anti-GFP (Genescript, product #A01388-40). Secondary antibodies were: HPR conjugated goat anti-rabbit and goat anti-mouse (1:2500, products #170-6515 and #172-1011, respectively). CCCP and DMSO were obtained from Sigma. Bafilomycin A1 was obtained from LC Laboratories. Mitotracker Deep Red FM, Lysotracker Red DND 99, and TMRE, and Hoechst 33342 were obtained from Life Technologies. 3-Hydroxy-1,2-dimethyl-4(1H)-pyridone was from Sigma.
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3

Western Blot Analysis of Mitochondrial Proteins

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Human, mouse and cellular protein extracts were homogenized in RIPA buffer and incubated in the following primary antibodies: mouse anti-Tim23 (1:1000, BD Biosciences), mouse anti-Tom20 (1:1000, Abcam), mouse anti-Total OXPHOS (1:1000, Abcam, ab110411), rabbit anti-eGFP (1:1000, Novus Biologicals, Littleton, CO, USA, NBP2-37821), rabbit anti-ClpX (1:2000, Abcam, ab168338), mouse anti-Grp75 (1:1000, Abcam, ab2799), mouse anti-Ndufs3 (1:1000, Abcam), rabbit anti-COX IV (1:1000, Abcam), rabbit anti-VDAC1/Porin (1:2000, Abcam, ab15895), mouse anti-α-Tubulin (1:5000, Sigma-Aldrich, T5168) and mouse anti-β-actin (1:5000, Sigma-Aldrich, A5441).
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4

Immunofluorescence Assay for PGRMC1 and TIM23 in MEL Cells

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Preparation of cells for immunofluorescence was carried as previously described65 with several modifications. Briefly, MEL cells were attached to poly-L-lysine coated coverslips (BD Bioscience) by incubating undifferentiated cells on coverslips for 24 hours at 37°C in 5% CO2. Cells were fixed in 4% paraformaldehyde for 20 minutes, permeabilized with 0.1% Triton X-100 for 20 minutes and blocked with 5% bovine serum albumin for 1 hour. Cells were incubated with rabbit anti-PGRMC1 (Sigma) diluted 1:100 and mouse anti-TIM23 (BD Biosciences) at a dilution of 1:200 overnight. Incubation with AlexaFluor 488 goat anti-rabbit IgG (H+L) (Life Technologies, Carlsbad, CA) and AlexaFluor 633 goat anti-mouse IgG (H+L) (Life Technologies) was carried out for 1 hour. Finally cells were counterstained with 300 mM DAPI nucleic acid stain (Thermo Fisher Scientific) for 5 minutes prior to mounting with ProLong Gold antifade (Life Technologies). Cells were washed with phosphate buffered saline (PBS) three times between each step in the process, reagents were diluted in PBS and all incubations were carried out at room temperature. Cells were imaged using a Zeiss LSM 710 Inverted Confocal microscope (Zeiss, Thornwood, NY) using a 100X oil immersion objective and images processed using Zen (Zeiss) software.
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5

Comprehensive Immunoblot Analysis of Mitochondrial Proteins

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For immunoblot analysis, the following antibodies were used: mouse anti-MFN1 (Abcam), rabbit anti-TOM20 (Cell Signaling Technology), mouse anti-TIM23 (BD Biosciences), rabbit anti-COXIV (Cell Signaling Technology), rabbit anti-UCHL1 (Cell Signaling Technology), mouse anti-tubulin (Developmental Studies Hybridoma Bank), rabbit anti–phospho-AMPKα (T172, Cell Signaling Technology), rabbit anti–phoshpo-ULK1 (S555, Cell Signaling Technology), mouse anti-AMPK (Abcam), rabbit anti-ULK1 (Cell Signaling Technology), rabbit anti-FUNDC1 (Novus Biologicals), mouse anti-VDAC1 (Abcam), mouse anti-NDUFS3 (Abcam), rabbit anti-Flag (Cell Signaling Technology), rabbit anti-HA (Cell Signaling Technology), mouse anti-Myc (MBL, Japan), mouse anti-TRIM63 (Santa Cruz Biotechnology), and rabbit anti-PKM antibody (Cell Signaling Technology). Peroxidase-conjugated secondary antibodies were purchased from the Jackson laboratory.
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6

Western Blot Analysis of Cell Signaling

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The cells were solubilized in M-PER reagent (Thermo Scientific) supplemented with protease inhibitors. The lysates were clarified by centrifugation at 16 000 × g for 30 min at 4 °C. Protein samples were loaded and separated on 6, 10 or 12% SDS-PAGE gel and immunoblotted with antibodies including mouse anti-GAPDH (sc-47724; Santa Cruz Biotechnology, 1:1000 dilution), mouse anti-Tim23 (611222; BD Biosciences, San Jose, CA, USA, 1:1000 dilution) and rabbit anti-hsp60 (12165; Cell Signalling, 1:1,000 dilution), rabbit anti-COX IV (4850; Cell Signalling, 1:2500 dilution), rabbit anti-AMPKα (5832; Cell Signalling, 1:1000 dilution), rabbit anti-phospho-AMPKα (2535; Cell Signalling, 1:1000 dilution), rabbit anti-p38 (8690; Cell Signalling, 1:1000 dilution), rabbit anti-phospho-p38 (4511; Cell Signalling, 1:1000 dilution), rabbit anti-phospho-ERK1/2 (4370; Cell Signalling, 1:1000 dilution), rabbit anti-phospho-ATF-2 (5112; Cell Signalling, 1:1000 dilution), rabbit anti-phospho-hsp27 (9709; Cell Signalling, 1:1000 dilution) and rabbit anti-phospho-MAPKAPK-2 (3007; Cell Signalling, 1:1000 dilution).
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7

Western Blotting and Immunofluorescence Assay Antibodies

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The following antibodies were used for Western blotting and immunofluorescence assays: mouse anti-HA (MERCK), rabbit anti-HA (MERCK), mouse anti-Myc (Santa-Cruz Biotechnology, Santa Cruz, CA, USA), rabbit anti-PINK1 (Novus Biologicals, Englewood, CO, USA), mouse anti-TIM23 (BD Biosciences, Franklin Lakes, NY, USA), mouse anti-TOM20 (BD Biosciences), mouse anti-Parkin (Santa-Cruz Biotechnology), rabbit anti-GAPDH (Cell Signaling Technologies, Danvers, MA, USA), rabbit anti-LC3B (MERCK) and rabbit anti-cleaved PARP (Cell Signaling Technologies). HRP-conjugated secondary antibodies were as follows: anti-Mouse and anti-Rabbit (both from GE Healthcare, Little Chalfont, UK). Secondary antibodies used in immunofluorescence experiments were conjugated with either Alexa Fluor 488, Alexa Fluor 555 or Alexa Fluor 405 (Thermo Fisher Scientific).
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