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9 protocols using leica dfc495

1

Tracking Trap Growth in Carnivorous Plant

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A cut piece of U. gibba stolon approximately 3 cm long from in vitro culture was placed in liquid 1B medium in a small Petri dish (Sterlin, 50-mm diameter, 124; Slaughter). The youngest trap after emergence from the circinate apex (approximately 150 μm) was imaged every 24 hours until maturity under bright-field light on a Leica M205C stereomicroscope with a Leica DFC495 camera (Leica, Milton Keynes, UK). Trap length (Fig 1A) was measured (Leica LAS version, 4.2 software) and natural log of length plotted against time (Microsoft Excel with LINEST function, Fig 3J, S3 Data). The growth curve was extrapolated back to when the trap was 10 μm long, corresponding to 1–2 cells, which we took to be the initiation stage.
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2

New Swertia Species Discovery and Assessment

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During three field expeditions in September 2007, September and November 2017, a total of fifteen flowering and five fruiting individuals from the type locality were collected from Tianmenshan National Forest Park, Zhangjiajie City, Hunan Province, Southwest China. The information and measurements of the new species were taken from live and dried herbarium specimens and from field data. Seeds were examined and imaged with a Leica M205C stereomicroscope attached to a video camera (Leica DFC495). The morphological comparisons with related species, viz., Swertiabimaculata, S.tashiroi Makino, S.oculata Hemsl., S.tozanensis Hayata, S.cordata (Wall. ex G.Don) C.B.Clarke and S.shintenensis Hayata, are based on herbarium specimens (about 2300 specimens) and relevant literature (Ho et al. 1988 ; Ho and Pringle 1995 ; Rybczynski et al. 2014 (link); Ho and Liu 2015 ). Specimens deposited in the following herbaria were examined: CSFI, CSH, CZH, JIU, HTC, IBK, IBSC, LBG, KUN, PE, SYS and WUK (Thiers 2015 ).
The number of mature individuals was recorded in the field in twenty 1 m2 sampling plots. We assessed the preliminary conservation status of the new species using our field knowledge and applying the IUCN (2017) criteria. The taxonomic treatment of the genus Swertia follows Ho and Liu (2015) .
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3

Histological Analysis of Myocardial Fibrosis and Amyloid

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Myocardial fragments were fixed in 4% buffered formalin, processed by a standard technique, and paraffin-embedded sections (3–4 μm thick) were stained with hematoxylin and eosin, Masson’s trichrome (Bio-Optica), Sirius Red (Bio-Optica) and used for histological examination. Masson’s trichrome-stained sections were used in total for morphometric evaluation of percent fibrosis at × 100 using the Image-Pro Plus program (version 6.0.0.260; Media Cybernetics, USA). Sirius Red-stained sections were used for a semi-quantitative 5-point assessment of the amyloid deposits distribution in the interstitium around blood vessels and cardiomyocytes: 0no deposits; 1deposits were around single cardiomyocytes; 2around small groups of cardiomyocytes; 3around half of cardiomyocytes and single vessels; 4around more than 75% of cardiomyocytes and blood vessels. The slides were examined by light microscope Leica DMRB with Leica DFC495 camera and Leica PL FLUOTAR 10 × /0.3 and Leica N PLAN 40 × /0.65 (Leica Microsystems Gmbh, Austria).
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4

Specimens Preservation and Measurement Protocols

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Specimens were collected by hand and preserved in 75% ethanol. Type series of the new species are deposited in the Museum of Hebei University, Baoding, China (MHBU).
Illustrations and measurements were produced using a Leica M205 stereomicroscope. The photographs were taken with a Canon 650D camera and a Leica M205FA stereomicroscope (with a digital color microscope camera Leica DFC495). Measurements (in mm) follow Sissom (1990) . Trichobothrial notations are done according to Vachon (1974) , and the morphological terminology mostly follows Hjelle (1990) . The terminology of metasomal carination is that of Vachon (1952) , and the terminology of pedipalp chelal carinae follows Soleglad and Sissom (2001) .
Movable finger dentition abbreviations used in the text are as follows: ID, inner denticles; IAD, inner accessory denticles; MD, median denticles; OD, outer denticles.
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5

High-quality Insect Specimen Photography

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The photographs (Figure 1) were taken following the method described by Taszakowski and Kaszyca [54 (link)]. To prepare high-quality photos that would enable advanced processing (e.g., obtaining a uniform background), the specimens were stuck onto transparent entomological glue boards and then cleaned with a thin brush. To improve the visibility of details, pictures of the labia were taken with the use of a dark background. The focus-stacked, colour photographs were captured using the following equipment: Leica M205C (stereomicroscope), Leica LED5000 HDI (high diffuse dome illumination), Leica DFC495 (digital camera), and Leica application suite 4.12.0 (software) (Leica Microsystems, Vienna, Austria). The resulting photographs were composed and enhanced with Image Composite Editor (panoramic image stitcher) and Adobe Photoshop CS6 graphic editor.
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6

Mesosoma Imaging of Dinoponera Species

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The images were captured using a Leica DFC 495 camera mounted on a Leica M205A stereozoom microscope (Leica Microsystems, Solms, Germany) and acquired by using LAS v.4.1.0 (Leica Microsystems, Switzerland). In addition, to observe the pronotal rugae of D.kuami and D.flora, scanning electron microscopy (SEM) images of specimens selected from each species were obtained. Subsequently, the head, metasoma, wings and legs were removed and only the mesosoma was retained. The separated mesosomes were immersed in 10% NaOCl to remove excess tissue. The detached mesosoma was washed with distilled water using a soft brush to remove the remaining tissues. After cleaning, the samples were dried and coated with gold ion particles for SEM observation (Hitachi SU8220 & SU8230, Tokyo, Japan). Image plates were prepared using Adobe Photoshop CS6 (Adobe Systems Inc., San Jose, CA, USA).
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7

Regenerate Tissues via Microscopy

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Amputations were conducted under a Nikon SMZ645 stereo microscope with a razor blade. Pictures of live regenerates were taken with a Leica MZ16F microscope, equipped with either a Leica DFC 490 or a Leica DFC 495 camera (Leica, Germany). A Leica TCS SP5 II confocal microscope was used to make confocal stacks for the EdU pulse and pulse-chase stainings. Stacks were edited with Fiji up to version 1.52i (Schindelin et al. 2012 (link)). Fiji was also used to measure pharynx and submarginal eye size. Figures and schemes were made with GIMP version 2.10 (https://gimp.org/) and Inkscape up to version 0.92 (https://inkscape.org/).
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8

Standardized Insect Photography Technique

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The photographs (Figs. 1, 2) were taken following the method described by Taszakowski and Kaszyca65 (link). To prepare high-quality photos that would enable advanced processing (e.g., obtaining a uniform background), the specimens were glued on transparent entomological glue boards and then cleaned with a thin brush. For better visibility of details, pictures of antennae were taken with the use of a dark background. The Focus-stacked, colour photographs were captured using the following equipment: Leica M205C (stereomicroscope), Leica LED5000 HDI (high diffuse dome illumination), Leica DFC495 (digital camera), Leica application suite 4.12.0 (software) (Leica Microsystems, Vienna, Austria), Image Composite Editor (panoramic image stitcher) and Adobe Photoshop CS6 graphic editor.

Antennae of examined species in light microscopy and SEM: L. occidentalis (a, b) and L. zonatus (c, d).

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9

Stereomicroscopy and Confocal Imaging of Live Flatworms

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Live animals were observed, amputated, and handled under a Nikon SMZ645 and SMZ-2B stereomicroscope (Nikon, Zürich). Squeeze preparations of animals were photographically documented using a Leica DM5000 B microscope, equipped with either a Leica DFC 490 or a Leica DFC 495 camera (Leica, Germany). All confocal stacks were generated on a Leica TCS SP5 II confocal microscope. Figures and schematics were made in GIMP up to version 2.10 (https://www.gimp.org/), Fiji up to version 1.52i (Schindelin et al. 2012) and Inkscape up to version 0.92 (https://inkscape.org/). Images that show internal structures of the animal (e.g. the nervous system, inner musculature, stem cells) are partial Z projections. We omitted the ventralmost and dorsal-most planes from the confocal stack to remove signal from unspecific staining in the rhabdites. In all images, animals are facing up or left. Mitotic cells and Sphase neoblasts were counted in three non-overlapping 100 μm × 100 μm boxes in the respective body regions in total confocal projections.
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