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16 protocols using lamin a

1

Whole-Cell Extraction and Western Blot Analysis

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For preparation of whole-cell lysis extracts, the cells were treated with Z-ajoene for 24 h and lysed with cell lysis buffer (Cell Signaling Technologies, Beverly, MA, USA). The cell lysates were then centrifuged at 10,000× g for 20 min at 4 °C. The supernatants were collected and protein concentrations were assessed using a BCA protein assay kit. The cytosolic and nuclear fractions were prepared as previously described with some adjustment [19 (link)]. Proteins were separated on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (GE Healthcare, Piscataway, NJ, USA). The membranes were probed with antibodies and visualized using the ECL chemiluminescence (GE Healthcare). The antibodies against β-catenin (BD Transduction Laboratories, San Jose, CA, USA), c-Myc, β-actin, lamin A (Cell Signaling Technology, Beverly, MA, USA) and cyclin D1 (Santa Cruz Biotechnology, Dallas, TX, USA) were used to detect the target proteins.
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2

Western Blot Analysis of Cellular Proteins

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Protein lysates were isolated from cells and run on 4 to 15% Tris⋅HCl poly-acrylamide gels. Proteins were transferred to nitrocellulose membranes and blocked with 1:1 Intercept PBS Blocking Buffer (LI-COR):PBS. Membranes were incubated in the following primary antibodies: HIF2α (Novus Biologicals NB100-122), VHL (Novus Biologicals, NB100-485), TET-2 (Cell Signaling Technology, 18950), TET-1 (Genetex, GTX124207), TET-3 (Genetex, GTX121453), HIF1α (Novus, NB100-105), SDHD (Abcam, ab189945), SDHB (Abcam, ab14714), Lamin A (Cell Signaling, 133A2), α-Tubulin (Cell Signaling, 2144S), and β-Actin (Novus Biologicals, NB600-501; AC-15). Proteins of interest were detected using IRDye 800CW and 680RD secondary antibodies (LI-COR) on a LI-COR Odyssey Fc Imaging System.
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3

Western Blot Analysis of Protein Targets

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Antibodies against Akt (catalog No. 4685), FoxO1 (catalog No. 2880), and lamin A (catalog No. 4777) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Antibodies against HCV core (catalog No. ab2740), NS3 (catalog No. ab65407), SREBP-1 (catalog No. ab28481), apoJ/clusterin (catalog No. ab69644), and TSPO (catalog No. ab109497) were purchased from abcam (Cambridge, UK). Antibody against IRS-1 (catalog No. 06-248) was purchased from EMD Millipore (Billerica, MA, USA). Antibody against phospho-IRS-1 (Tyr896) (catalog No. 1813-1) was purchased from Epitomics (Burlingame, CA, USA). Antibody against phospho-Akt (Ser473) (catalog No. GTX61708) was purchased from GeneTex, Inc. (Irvine, CA, USA). Antibody against β-actin (catalog No. A5441) was purchased from Sigma-Aldrich.
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4

Subcellular Fractionation and Western Blotting

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Cells were lysed in SDS lysis buffer (100 mM NaCl, 500 mM Tris, pH 8.0, 10% SDS). For detection of NF-κB p100/52, p65 and c-Rel, a nuclear extraction kit (Thermo Scientific, MA, USA) was used to separate nuclear and cytoplasmic fractions. Cell extracts were subjected to 8–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Antibodies for Western blotting include: Galectin-3 (cat. 125402) (Biolegend, San Diego, USA), Galectin-1 (cat. Ab25138) and TSG101 (cat. ab30871; detects murine and human proteins) (Abcam, Cambridge, MA, USA), CD63, Erk1/2, NF-κB p65 (sc-8008 Figure 4G) (Santa Cruz Biotechnology, USA), phospho-Erk1/2, NF-κB p65 (cat. 8242) and calreticulin (cat. 2891S; detects murine and human proteins) (Cell Signaling Technology, USA), NF-κB p100/52 (cat. 06–413) (Millipore, USA). Gapdh (Chemicon International, USA or Millipore MAB374), α-tubulin (Oncogene Science, Cambridge, USA), lamin A, Histone H3 (Cell Signaling Technology, USA) or β-actin (cat. GTX109639, GeneTex) were used as a loading control.
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5

HMGB1 Signaling Pathway Analysis

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ALO and recombinant human HMGB1 were purchased from Sigma Chemical Co. (St. Louis, MO), ERK signal pathway inhibitor, U1026 was purchased from Abcam (Cambridge, MA), specific antibody against HMGB1 (Product No. 6893S), RAGE (Product No. 6996S), TLR2 (Product No. 2229S), LaminA (Product No.4777 ) were purchased from Cell Signaling Technology (Danvers, MA), specific antibody against ERK1/2 (Product No. Ab54230), phosphorylated-ERK1/2 (Product No. Ab207470), PARP (Product No. Ab32138), cleaved-PARP (ab32561), BCL-2 (Product No. Ab32124), Caspase-3 (Product No. Ab184787), Cleaved Caspase-3 (Product No. Ab2302), TLR4 (Product No. ab13867) and β-actin (Product No. Ab8226) were purchased from Abcam (Cambridge, MA). HMGB1 ELISA kit (Product No. 326056538) was purchased from Shino-test Corporation (Japan). Annexin V/PI apoptotic kit (KGAV116) was purchased from KeyGen Biotech Co., Ltd. (Nanjing, China). BCA protein assay kit (Product No. P 0010) and CCK8 kit (Product No. C0037) were purchased from Beyotime Institute of Biotechnology (Haimen, China).
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6

Polydatin Modulates NLRP3 Inflammasome

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Polydatin was purchased from J&H Chemo Co., Hangzhou, China. RPMI-1640 medium, phosphate-buffered saline (PBS), fetal bovine serum (FBS), and trypsin-EDTA were purchased from Welgene Inc., Korea. Antibodies against NLRP3 (# 13158), phospho-p65 (# 3031), p65 (# 8242), Lamin A (# 4777), α-tubulin (# 2125), COX-2 (# 4842), caspase-1 (# 3866), SOD1 (# 4266), GPx (# 3206), HO-1 (# 43966), and β-actin (# 3700) were purchased from Cell Signaling Technology (Danvers, MA, USA). The ROS inhibitors N-acetyl-l-cysteine (NAC) and H2DCFDA were purchased from Sigma Chemical Co., St. Louis, MO, USA.
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7

Protein Expression Analysis by Western Blot

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Protein samples were separated by gradient electrophoresis on 8–15% SDS/PAGE gels. The following antibodies were used to detect the proteins of interest: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), LAMIN A, β-TUBULIN, SIRT3, Cytochrome c, Bax, Bcl-2, and Cytochrome c oxidase (COX) IV from Cell Signaling Technology (Danvers, MA, USA) and FoxO3a, SOD2, CAT from Abcam (Cambridge, UK). Western blot analysis was performed as described previously20 (link) using the protocols provided by the primary antibody suppliers.
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8

Western Blot Analysis of Antioxidant and Apoptotic Markers

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HCECs were seeded in 60 mm dishes (6 × 105 cells/mL) and co-treated with PCE (1, 10, 100 μg/mL) for 1 or 24 h. The cells were washed with phosphate-buffered saline (PBS) and lysed with RIPA lysis buffer (Invitrogen, Carlsbad, CA, USA). Cell lysate (30 mg) was separated by 8, 10, and 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred to Polyvinylidene fluoride (PVDF) or nitrocellulose membranes. The membranes were blocked in skim milk dissolved in Tris-buffered saline with 0.1% Tween 20 (TBST) buffer for 1 h. Membranes were incubated with the following diluted (1:1000) primary antibodies: Cyclooxygenase-2 (COX-2), p65, phopho-p65, Poly (ADP-ribose) polymerase (PARP), Caspase-3, Bcl-2, Bcl-2-associated X protein (BAX), HO-1, Superoxide dismutase-1 (SOD-1), glutathione peroxidase (GPx) β-actin, and Lamin A (Cell Signaling, Danvers, MA, USA) in Tris-HCl-based buffer containing 0.2% Tween 20 (TBS-T; pH 7.5). Band intensities were measured using ImageJ software (NIH, Bethesda, MD, USA).
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9

Pyrotinib and Dalpiciclib Receptor Signaling

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Pyrotinib (SHR1258) and dalpiciclib (SHR6390) were kindly provided by Hengrui Medicine Co., Ltd. Tamoxifen (HY-13757A) and trastuzumab were purchased from MCE company. Compounds were dissolved in dimethylsulfoxide (DMSO) at a concentration of 10 mM and stored at –20°C for further use. Trastuzumab were dissolved and used according to the manufacturer’s instructions. The following antibodies were purchased from Cell Signaling Technology (Beverly, MA): ER (#13258), p-HER2 (Tyr 1221/1222, #2243), HER2 (#4290), p-Akt (Ser473, #4060), AKT (#4685), p-mTOR (Ser2448, #5536), mTOR (#2983), pRb (Ser 780, #8180), Rb (#9309), CDK4 (#12790), CDK6 (#13331), Ubi (#3936), Lamin A (#4777), HSP90 (#4877), and GAPDH (#5174). The pCDK4 (Thr172, abs139836) antibody was purchased from Absin Technologies (Shanghai, China).
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10

Protein Quantification and Western Blot Analysis

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Cells were lysed by using 1× RIPA buffer (Cell Signaling Technology, Danvers, MA, USA) and the protein concentration was determined using BCA Protein Assay kit (Pierce, Rockford, IL, USA) method. Equal amounts of cell protein were subjected to electrophoresis in SDS-PAGE gels and then transferred to PVDF membranes (Millipore) for antibody blotting. Antibodies used in our study were as follows: β-Actin, PARP, cleaved (c)-caspase 3, NF-κB/p65, p-NF-κB/p65, Bcl-xl, MMP9, Cyclin D1, IL-1α and Lamin A (Cell Signaling Technology, Beverly, MA, USA), Ki-67 (Abcam, Cambridge, Massachusetts, USA). Horseradish peroxidase-conjugated IgG (Pierce) was used as the secondary antibody. Expression level of indicated proteins were detected using Bio-Rad Clarity™ western ECL substrate (Bio-Rad Laboratory, CA, USA). For dissociation of nuclear, mitochondrial and cytoplasmic proteins, a specific isolation kit from Keygen (Nanjing, China) was utilized according to manufacturer's instructions.
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