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45 protocols using mab3402

1

Calcineurin Immunohistochemistry Protocols

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The following primary antibodies were used in the present study: rabbit anti-Pan-Calcineurin A (2614, CST, USA), rabbit anti-Calcineurin A (ab3673, Abcam, USA), rabbit anti-β-Actin (4970, CST, USA), mouse anti-NF-200 (MAB5262, Chemicon, USA), mouse anti-GFAP (MAB3402, Chemicon, USA), goat anti-CGRP (ab36001, Abcam, USA), and lectin from Bandeiraea Simplicifolia-BSI-B4 FITC conjugate (L2895, Sigma-Aldrich, USA). The secondary antibodies included fluoresce in (FITC) Affinipure donkey anti-mouse IgG (715-095-150, Jackson ImmunoResearch, USA), Alex Fluor 488 AffiniPure donkey anti-goat IgG (705-545-003, Jackson ImmunoResearch, USA) and Cy3-conjugated donkey anti-rabbit IgG (711-165-152, Jackson ImmunoResearch, USA). The drugs included ulinastatin (Techpool Company, Guangdong, China) and exogenous CN (BML-SE163-5000, Enzo LifeSciences, USA). IL-10 ELISA kits (R1000, R&D Systems Inc, MN, USA) were used to measure IL-10.
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2

Immunohistochemical Analysis of Brain Markers

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Brain tissues were obtained from control animals of 3 months of age, previously authorized in the project 545/2019-PR. Immunohistochemistry was performed on paraformaldehyde-fixed, wax-included brains as described previously [26 (link)]. In brief, slides were xylene deparaffinized and rehydrated through a descending series of alcohol to water before being boiled in citrate buffer (pH 6.0) for antigen retrieval. Sections were then incubated with a blocking solution containing 0.5% milk, 10% FBS, and 1% BSA and hybridized with the primary and Alexa Fluor secondary antibodies (Molecular probes, Eugene, Oregon, USA). Primary antibodies were rabbit anti-Tmem175 (1:200, bs-18922R Bioss Inc, Boston, MA, USA), mouse anti-GFAP (1:200, MAB3402 Chemicon, Temecula, CA, USA), mouse anti-NeuN (1:100, MAB377 Chemicon, Temecula, CA, USA), and Chicken anti-Iba1 (1:2000, 234,009 Synaptic Systems, Goettingen, Germany). The immunohistochemistry experiment to visualize Tmem175, Iba1, and NeuN was performed with three compatible antibodies; fluorescence was excited at 488 nm (Tmem175, green), 555 nm (NeuN, red), and 647 nm (Iba1, red) for secondary antibodies. All immunostaining images were captured with a Nikon eclipse NI microscope.
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Immunostaining of Brain Sections

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Mice were trans-cardially perfused and fixed using 1X PBS(−) and 4% paraformaldehyde (PFA), respectively. Brains were cryoprotected in 30% sucrose prior to OCT embedding. For co-localization staining, 12 μm frozen sections were processed for immunostaining with antibodies against H3K9me3 (Upstate #07-422; 1:500), Glial Fibrillary Acidic Protein (GFAP)—clone GA5 (Millipore #MAB3402; 1:500), Vimentin (Sigma V2258; 1:500), Polysialic Acid-NCAM (PSANCAM)—clone 2-2b (Millipore #MAB5324; 1:500), Mash1(Abcam #ab38556; 1:500), and EdU 5-ethynyl-2′-deoxyuridine (Life Technology, #C10337 Click-iT® EdU).
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Lentiviral Modification Effects on h-iNSC Differentiation

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To determine the effects of LV modification on h-iNSCTE differentiation, h-iNSCTE were transduced with LV–GFP-FL or LV-sTR. Engineered or unmodified cells (1 × 105 cells per well) were seeded on coverslips, fixed, permeabilized, and incubated for 1 hour with anti-nestin polyclonal antibody (1:500; Millipore, ABD69). Cells were washed and incubated with the red secondary antibody (Biotium, 20038) for 1 hour. Cells were then washed, mounted, and imaged using fluorescence confocal microscopy. For differentiation, engineered or nontransduced h-iNSCTE (1 × 105 cells per well) were cultured for 12 days in stem cell medium depleted of doxycycline, epidermal growth factor, and fibroblast growth factor. Cells were then stained with antibodies directed against nestin, GFAP (1:250; Millipore, MAB3402), or TUJ-1 (1:1000; Sigma, T8578) and detected with a red secondary antibody (Biotium). Nuclei were counterstained with Hoechst 33342, and the results were analyzed using an FV 1200 laser confocal microscope (Olympus).
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5

Immunofluorescence of Retinal Sections

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Immunofluorescence of retinal sections was performed as previously reported [33 (link), 37 (link)]. The eyecups were cut into 10 μm thick sections. The cryosections were, respectively, incubated with monoclonal mouse anti-mouse A2AR antibody (05-717; Millipore, USA), polyclonal rabbit anti-mouse Iba-1 antibody (019-19741; Wako, Japan), monoclonal rat anti-mouse CD11b antibody (ab8878; Abcam, USA), monoclonal rat anti-mouse MHC Class II antibody (ab25333; Abcam, USA), monoclonal mouse anti-mouse GFAP antibody (mab3402; Sigma-Aldrich, USA), polyclonal rabbit anti-mouse GFAP antibody (ab7260; Abcam, USA), and polyclonal rabbit anti-mouse IL-1β antibody (ab9722; Abcam, USA) by overnight incubation at 4°C. The cryosections were then, respectively, incubated in Alexa 555-conjugated anti-mouse IgG (4409), Alexa 488-conjugated anti-mouse IgG (4408), Alexa 555-conjugated anti-rabbit IgG (4413), Alexa 488-conjugated anti-rabbit IgG (4412), or Alexa 488-conjugated anti-rat IgG (4416) (all from cell signaling technology, Inc.). The sections were finally counterstained with DAPI (sc-3598; Santa Cruz Biotechnology, Inc.). Images were captured with a confocal microscope (SP5; Leica Microsystems, Inc., USA) with a fixed detection gain for each comparative section.
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Lentiviral Delivery of Dominant-Negative IκBα

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Lentiviral IκBα was cloned by inserting cDNA of dominant-negative IκBα in synapsin promoter-driven lentiviral vector as previously described14 (link), and replacement of IκBα by GFP cDNA was used as the matched control. Lentiviruses were generated in HEK293T cells and then purified as previously described14 (link). Brain histology was analyzed using brain sections and immunostaining. Mice under anesthesia were transcardially perfused with 4% PFA and brains were removed, post-fixed in 4% PFA for four hours, and infiltrated with 20% – 30% sucrose. 20 μm-thick brain sections were blocked with serum of appropriate species, penetrated with 0.2% Triton-X 100, treated with primary antibodies including mouse anti-GFAP (Millipore, MAB3402, 1:1000), mouse anti-NeuN (Millipore, MAB377, 1:1000), rabbit anti-TGF-β (Abcam, ab53169, 1:200), and mouse anti-HuR (Santa Cruz, sc5261, 1:500), and subsequently reacted with fluorescent secondary antibodies (Invitrogen, 1:1000). Naïve IgGs of appropriate species were used as negative controls. DAPI staining was used to reveal all cells in the section. Images were taken using a confocal microscope.
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7

Immunocytochemistry of iPSCs and Neurons

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i3N iPSCs or i3Neurons in coverslips were fixed with conditioned medium containing 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and incubated for 1 hr in blocking solution containing PBS, 0.01% Triton X-100, and 5% normal goat serum. The cells were then incubated in blocking solution containing primary antibody overnight at 4°C, followed by incubation with secondary antibody for 1 hr. Images were acquired with an LSM880 confocal system (Zeiss) with Airyscan and a 20× or 63× oil-immersion objective lens. Antibodies used for immunocytochemistry were those against SOX2 (sc-17320S; Santa Cruz Biotechnology), OCT4 (sc-5279; Santa Cruz Biotechnology), TRA-1-81 (sc-21706; Santa Cruz Biotechnology), MAP2 (AB5622 or MAB3418; Millipore), VGlut1 (MAB5502; Millipore), βIII tubulin (TUJ1; Aves Labs), neuronal nuclear antigen (MAB377; Millipore), GABA (A2052; Sigma), HT7 (MN1000; Thermo Fisher), ankyrin G (N106/36; NeuroMa), synapsin-1 (D12G5; Cell Signaling), Olig2 (AB9610; Millipore), GFAP (MAB3402; Millipore), and GluR2/3 (AB1506; Millipore).
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8

Hippocampal Neuronal and Glial Analysis

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The mice were perfused with 4% paraformaldehyde in phosphate-buffered saline, and the brain was dissected and placed in sucrose solution. After cryoprotection using a 15 and 30% sucrose gradient, coronal hippocampal slices were prepared at 25-μm thickness using a freezing microtome (CM-1950, LEICA). To confirm the efficiency of the specific PP2A knockout and the effect on the development of neurons and neurogliocytes in the hippocampal CA1 area, the slices were incubated in primary antibody overnight at 4 °C. After incubation with the secondary antibody for 2 h and DAPI (10,236,276,001, Roche, 1 μg/ml) for 15 min at room temperature, the samples were examined by using confocal laser microscopy (FV-1000, OLYMPUS). The antibodies and dilutions were as follows: PP2A C subunit antibody (#2038, Cell Signaling Technology, 1:250), anti-NeuN rabbit polyclonal antibody (ABN78, Millipore, 1:500), goat anti-rabbit IgG (H + L) Cy3 (BS10007, Bioworld Technology, 1:400) and anti-glial fibrillary acidic protein (GFAP) antibody, and clone GA5 (MAB3402, Millipore, 1:500).
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9

Quantifying Injury-Induced Inflammation

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Brains were sectioned with a microtome and stained, with every sixth 30 µm section through the injury site labeled with antibodies against CD68 (activated microglia) or GFAP (astrocytes). Sections were imaged by mosaic stitching under a 10× objective. Inflammation was assessed by area and density of CD68 (1:500, Cat #MCA1957, Bio‐Rad, RRID_322219) staining while injury size was determined by a GFAP (Cat #MAB3402, Millipore, RRID_94844) negative area surrounded by GFAP positive astrocytes as described previously (Jia, Malone, et al., 2020 (link)). Both CD68 and GFAP were normalized to staining in the contralateral, non‐injured hemispheres using ImageJ software.
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10

Quantitative Analysis of AQP4 and GFAP

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The perihematomal tissues were extracted and then homogenized in lysis buffer containing a protease inhibitor cocktail. The supernatant was collected after centrifugation at 12,000 rpm for 10 min. The protein concentration was determined using the rapid gold BCA protein assay kit (Thermoscientific, Rockford, United States). Equal amount of protein were separated through 10% SDS PAGE then transferred onto a PVDF membrane (Millipore, Billerica, MA, United States). The blots were incubated overnight at 4°C with anti-AQP4 (ab46182, abcam) and anti-GFAP (MAB3402, Millipore) antibodies. Protein bands were detected using an enhanced chemiluminescence detection system (Cell Signaling Technology, Beverly, MA, United States) and the intensities of immunoreactive bands were analyzed using an image analysis program (Image J, NIH, United States).
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