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7 protocols using il 1β 200 01b

1

Mitochondrial Dynamics Regulation in Inflammation

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The specific reagents used in this study included antibodies against DNM1L (A2586), GAPDH (AC002), AKT (A3145), IKK (A2087), NF‐kBp65 (A2547), IL‐8 (A2541) from ABclonal (Wuhan, China); antibodies against p‐AKT (4060), p‐IKK (2697T), LC3B (3868T), COX‐2 (12282T) from Cell Signaling Technology; antibodies against NFKBIA (10268‐1‐AP) from Proteintech; the DNM1L inhibitor Mdivi‐1, a mitochondrial division inhibitor 1 (M0199) from Sigma‐Aldrich; IL‐1β (200‐01B) from Peprotech; MitoTracker Green, BCA protein assay kit and Annexin V‐FITC (C1048, P0010S, C1063) from Beyotime; DNM1L‐specific small interfering RNA (siRNA) and control scramble siRNA from Guangzhou RiboBio; the Genomic DNA Removal Kit, SYBR Green PCR Kit from ABM; the CCK8 kit from MEC; ROS Fluorescent Probe‐DHE from Vigorous; primers from Sangon Biotech; and SDS‐PAGE gels from Epizyme.
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2

Cytokine-Induced Senescence in HUVECs

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Recombinant human TNF‐α (315‐01A), IL‐6 (212–16), IFN‐γ (315–05), and IL‐1β (200‐01B) were purchased from Peprotech, Cranbury, NJ, and the JAK inhibitors, ruxolitinib (7064) and remdesivir (7226), from R&D Systems, Minneapolis, MN. Cells were stimulated with the cytokines IL‐6 (50 ng/ml), TNF‐α (20 ng/ml), and IFN‐γ (20 ng/ml) alone or a combination of TNF‐α + IFN‐γ (20 ng/ml of each) or all three (“cocktail” of IL‐6, TNF‐α, and IFN‐γ, 20 ng/ml of each) for 3, 5, or 7 days, unless indicated otherwise. For experiments with inhibitors, cells were cultured with or without JAK inhibitor (1 μM) or RDV (2 μM) for 30 min prior to cytokine stimulation. For conditioned medium (CM) experiments, cells were stimulated with or without cytokines for 3 days. Culture supernatants were then collected, centrifuged, filtered, and mixed with culture media at a 1:2 ratio. Early passage HUVECs were then cultured with control CM or cytokine‐induced senescent cell CM for 24 h.
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3

Multiplex Cytokine Assay Reagents

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Antibodies used in the study were purchased from R&D systems, including monoclonal capture antibodies: IL-1β (MAB601), IL-3 (MAB603R), IL-6 (MAB206), IL-10 (MAB2172), TNF-α (MAB610) and MCP-1 (MAB679); biotinylated polyclonal detection antibodies: IL-1β (BAF201), IL-3 (BAF203), IL-6 (BAF206), IL-10 (BAF217), TNF-α (BAF210) and MCP-1 (BAF279). Respective recombinant human proteins for spiking experiments were purchased from Peprotech: IL-1β (200-01B), IL-3 (200-03), IL-6 (200-06), IL-10 (200-10), TNF-α (300-01A) and MCP-1 (300-04).
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4

Inducing and Reversing Endothelial-Mesenchymal Transition

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For the induction of endothelial-to-mesenchymal transition (EndMT), HUVECs were cultured either in the normal cell culture medium as described in the section “Cell Culture” (Control), or in a medium without epidermal growth factor and bovine brain extract, supplemented with either 10 ng/mL TGF-β2 (302-B2, R&D System), or 10 ng/mL TGF-β1 (240-B, R&D System) and 10 ng/mL IL-1β (200-01B, Peprotech)38 (link). Nitric oxide synthase was inhibited by 1 mM N-Nitroarginine methyl ester (L-NAME). To reverse EndMT induction, the medium containing the named stimuli or inhibitor was replaced after 3, 7, or 10 days of culture with normal control medium and cultivated for 4 days. Medium and treatment was replenished every second day. After day 1, 2, 3, 7, 10, 11, or 14 RNA was isolated. For cell cycle inhibition assay, we treated the cells with 2.5 μM Vitexicarpin (CFN98172, Chem Faces) or equal amounts of DMSO after TGF-β2 treatment for 4d.
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5

Molecular Signaling Assays with Diverse Reagents

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LPS (L6529), puromycin (P8833), and PMA (P8139) were purchased from Sigma-Aldrich. TNF-α (300-01A) and IL-1β (200-01B) were from Peprotech. Cell lysis buffer (9803) was from Cell Signaling. Phosphatase Inhibitor Cocktail 3 (P0044) and Protease inhibitor cocktail (P8340) were from Sigma-Aldrich. Dynabeads Protein G (10004D), Dynabeads Protein A (10001D), SuperSignal West Femto Maximum Sensitivity Substrate (34096), and Pierce BCA Protein Assay (23225) were from Thermo Fisher Scientific. Dual-Luciferase Reporter Assay System (E1910) was from Promega. Nitrocellulose membrane (1620115) was from Bio-Rad. Polyethyleneimine (PEI) (24313-2) was purchased from Polysciences. Purified recombinant IKKα (TP761707) and IKKβ (TP750220) were purchased from Origene.
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6

Angiogenesis Regulation via Oxidative Stress

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The following chemicals and concentrations were used for stimulation: human recombinant VEGF-A 165 (R&D, 293-VE, 30 ng/mL), DMOG (400091, Merck, 1 mM), acriflavine (A8126, Sigma-Aldrich, 10 µM), Low Density Lipoprotein from Human Plasma, oxidized (oxLDL, L34357, Thermo Fisher, 10 µg/mL), DMSO (D2650, Sigma-Aldrich), Propranolol hydrochloride (P0884, Sigma-Aldrich, 100 µM), TGF-β2 (100-35B, Peprotech, 10 ng/mL), Interleukin 1β (IL-1β, 200-01B, Peprotech, 1 ng/mL) and RNase A (EN0531, Thermo Fisher).
The following antibodies were used: β-Actin (A1978, Sigma-Aldrich), BRG1 (ab110641, Abcam), VWF (ab6994, Abcam), PECAM1 (sc-376764, Santa Cruz), FLT1 (#36110, ThermoFisher) and TGFB2 (sc374658, Santa Cruz).
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7

Recombinant Protein Ligands and Antagonists

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Human recombinant PK2 (#100-46), tumor necrosis factor α (TNFα) (300-01A), IL-1β (#200-01B), and transforming growth factor β (TGFβ) (#100-21C) were obtained from Peprotech (Rocky Hill, NJ, USA). The PKR1 and PKR2 antagonist41 (link) [PKRA7 (508942)] was obtained from Merck (Darmstadt, Germany), and the PKR1 antagonist (PC-7)42 (link) was generated by one of the authors of the current study (G.B.).
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