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10 protocols using α akt

1

CEACAM1 Immunoblotting in Prostate

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35 μg of protein lysates from the anterior prostate lobe of overnight fasted age-matched mice was separated using 4–12% SDS-PAGE (Invitrogen). Proteins were immunoblotted (Ib) with polyclonal antibodies against CEACAM1 (as above), α-PCNA (Santa Cruz Biotechnology), α-phospho-p44/42(pMAPK), α-p44/42(MAPK), α-phosphoSer 473 Akt, α-Akt, α-PTEN and α-SNAIL (all from Cell Signaling Technology, Denvers, MA) followed by reprobing (reIb) with monoclonal antibody against GAPDH or tubulin (Santa Cruz Biotechnology) to normalize for total protein content. Proteins were detected using LiCOR secondary antibodies according to manufacturer's instructions (LiCOR Biosciences, Lincoln, BE) and the protein band density was measured using Image J software and calculated as percentage of the amount of proteins loaded.
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2

Western Blot Analysis of Cell Signaling

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The cells were homogenized in lysis buffer (50 mM/L HEPES pH 7.5, 150 mM/L NaCl, 10% glycerol, 1% Triton X-100, 1 mM/L EGTA, 1.5 mM/L MgCl2, 10 mM/L NaF, 10 mM/L sodium pyrophosphate, 1mM/L Na3VO4, 10 μg approtinin/ml, 10 μg leupeptin/ml) (Sigma). The following antibodies were used: α-RAS, α-RAC, α-CDC42, α-RHO, α-pEGFR, α-EGFR, α-pFAK, α-FAK, α-pSCR, α-SCR, α-pMEK, α-MEK, α-pERK1/2, α-ERK1/2, α-pAKT, α-AKT, α-pGSK3 α /β, α-GSK3 α /β, α-β catenin, α-pCHK2, α-CHK2, α-tubulin, α-SP1, α-pRET, α-RET (Cell Signaling, Danvers, MA, USA), and α-SOD3 (Santa Cruz, Santa Cruz, CA, USA). Signal density analysis was performed using ImageJ software GEL blot software.
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3

Western Blot Analysis of Phosphorylated Proteins

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Whole-cell lysates were prepared in lysis buffer (1% SDS, 10% glycerol, 80 mM Tris-HCl, pH 6.8) that had been pre-heated to 95°C. Proteins were transferred to Immobilon-FL PVDF membranes (Millipore) in transfer buffer (50 mM Tris base, 40 mM glycine, 0.04% SDS, 10% methanol) with an Owl semidry transfer apparatus (Thermo Scientific). Membranes were incubated with primary antibodies overnight at 4°C in 3% skim milk in Tris-Buffered Saline Tween-20 (TBST) (50 mM Tris–HCl, 150 mM NaCl, 0.05% Tween-20 [pH = 8.0]). Primary antibodies were α-phospho-AKT (Thr308) (#2965, Cell Signaling, 1:1000), α-phospho-AKT (Ser473) (#4060, Cell Signaling, 1:1000), α-AKT (#2920, Cell Signaling, 1:1000), α-phospho-S6 (Ser240/244) (#5364, Cell Signaling, 1:1000), α-S6 (#2317, Cell Signaling, 1:1000), α-SOX2 (MAB2018, R&D systems, 1:500), and α-SHP2 (C-18, Santa Cruz, 1:2000). After primary antibody binding, membranes were washed three times with TBST and probed with anti-rabbit (IRDye 800RS, LI-COR Biosciences, 1:10,000) and goat anti-mouse (Alexa Fluor 680, Invitrogen, 1:15,000) secondary antibodies in TBST for 1 hour at room temperature. After washing three times in TBST, proteins were visualized using an Odyssey Infrared Imaging System (LI-COR Biosciences).
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4

Cellular Signaling Pathway Assay

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Cell lysates were prepared using PLC cell lysis buffer (50 mM HEPES, pH 7.5, 150 mM NaCl, 10% glycerol, 1% Triton X-100, 1 mM EGTA, 1.5 mM magnesium chloride, 100 mM sodium fluoride supplemented with 1 mM vanadate, 10μg/ml leupeptin and 10μg/ml aprotinin). The following antibodies were used: α-ERK1/2, 1:2,000 dilution (9102L), α-phospho-ERK1/2, 1:2,000 dilution (9101L), α-AKT, 1:4,000 dilution (9272S), α-phospho-AKT (S473), 1:1,000 dilution (9271S) and α-phospho-AKT (T308), 1:1,000 dilution (9275S), all purchased from Cell Signaling Technology. Monoclonal α-FLAG-M2 antibody, 1:4,000 dilution (F3165–1MG) and α-FLAG polyclonal antibody, 1:2,000 dilution (F7425-.2MG), α-β-actin, 1:10000 dilution (A2066) were purchased from Sigma-Aldrich. α-Caspase-3 1: 1,000 (sc-56053) and α-Vinculin 1: 3,000 dilution (sc-73614) were purchased from Santa Cruz Biotechnology.
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5

VEGF-A Signaling Pathway Analysis

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For lysates, cells were serum deprived for 2 h and stimulated or not with 30 ng/ml VEGF-A for 15 min. When used, inhibitors were added to cells for 1 h prior to growth factor stimulation. Total proteins were extracted in Laemmli buffer (2.5 mM Tris-HCl, pH 6.8, 2% SDS, 10% glycerol), quantified and equal amounts of each sample were resolved by SDS-PAGE and transferred to PVDF membrane. After blocking with TBS/0.1% Tween 20/5% BSA, membranes were incubated with primary antibody overnight at 4° C. The following primary antibodies were used: rabbit α-pY1175 VEGFR2, α-VEGFR2, α-pS473 Akt, α-pT308 Akt, α-Akt, α-pS235/236 S6, α-pS65 and pT37/46 4EBP1 (all from Cell Signaling Technology), α-β actin (Santa Cruz Biotecnology), α-p110 α (ThermoFisher Scientific). Immunoreactive proteins were identified with secondary antibody coupled to HRP antibody and visualized by ECL. Quantification of the bands was done by NIH ImageJ on representative western blots; band intensities of phosphorylated Akt were normalized on total Akt, and analogously those for phosphorylated VEGFR2 were normalized on total VEGFR2, whereas band intensities of phosphorylated S6 and 4EBP1 were normalized on β actin.
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6

Western Blot Analysis of Signaling Proteins

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Cell suspensions were washed in PBS, pelleted, incubated in RIPA lysis buffer, and immunoblotting was performed as described previously28 (link). The following antibodies were utilized: α-FAK C-20 (Santa Cruz, Dallas, TX; [0.2 μg/ml]), α-ERK p44/42 (Cell Signaling, Danvers, MA; [1:2000]), and α-AKT (Cell Signaling; [1:1000]).
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7

Cell Culture Experiments with Targeted Inhibitors

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The following reagents were used in cell culture experiments: cisplatin (Tocris, 2251), etoposide (Millipore Sigma, E1383), LY2874455 (Selleckchem, S7057), infigratinib (Selleckchem, S2183), erdafitinib (Selleckchem, 8401), cabozantinib malate (Selleckchem, S4001), and lucitanib (MedChemExpress, HY-15391). cisplatin was dissolved in normal saline for stock preparations. All other small molecules were dissolved in DMSO for stock preparations. The following antibodies were used for immunoblotting experiments: α-p-FRS2 antibody (Cell Signaling Technology, 3864 S), α-p-Erk1/2 (Cell Signaling Technology, 9101 S), α-Erk1/2 (Cell Signaling Technology, 9102 S), α-p-Akt (S473) (Cell Signaling Technology, 9271 S), α-Akt (Cell Signaling Technology, 9272 S), α-ETV4 (Abcam, ab189826), and α-ETV5 (Thermo Fisher, PA5-66555).
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8

Western Blot Analysis of SLC16A Transporters

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Cells were centrifuged, washed once with cold PBS and subsequently lysed in Nonidet-40 lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM EDTA, 1% NP-40, 1 mM PMSF and one tablet of Roche EDTA-free protease inhibitor cocktail (Sigma-Aldrich) per 50 mL) for 10 min on ice. Lysates were then centrifuged (13,000 rpm, 10 min, 4 °C) and proteins were quantified with the Bradford assay using γ-globin as a standard (Bio Rad). Cell lysates were separated by SDS-PAGE and transferred to nitrocellulose membranes Protran BA85 (GE Healthcare). The membranes were incubated with α-SLC16A1 (Santa Cruz Biotechnology; sc-365501 mouse mAb 1:500 dilution), α-SLC16A3 (Santa Cruz Biotechnology; sc-376140 mouse mAb 1:500), α-FLAG (Sigma-Aldrich; F1804 mouse mAb 1:1000), α-HSP90 (BD Biosciences; 610418 purified mouse Ab 1:2000) or α-AKT (Cell Signaling Technologies; #4685 rabbit mAb 1:1000) and visualized with goat-anti-mouse IgG (115-035-003) or goat-anti-rabbit IgG (111-035-003) horseradish peroxidase-conjugated secondary antibodies (Jackson ImmunoResearch; 1:5000) utilizing the ECL western blotting system (Thermo Fisher Scientific).
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9

Integrin-Mediated Signaling Pathway Analysis

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Primary antibodies used in this study include: α-fibronectin (ab2413; Abcam), α-tubulin (DM1A; Sigma-Aldrich), α-GAPDH (1:2500, 14C10; Cell Signaling Technology), α-collagen IV (1:100, ab6586; Abcam), α-phospho-Src (2101; Cell Signaling Technology), α-Src (36D10; Cell Signaling Technology), α-phospho-FAK (3283; Cell Signaling Technology), α-FAK (D5O7U; Cell Signaling Technology), α-phospho-Erk1/2 (4370; Cell Signaling Technology), α-Erk1/2 (4695; Cell Signaling Technology), α-phospho-Akt (9271; Cell Signaling Technology), α-Akt (4691; Cell Signaling Technology), α-integrin α1 (ITGA1; ab181434; Abcam), and α-integrin α2 (ITGA2; ab181548; Abcam) All antibodies were used at a concentration of 1:1000 unless indicated otherwise. Pharmacologic inhibitors include: dasatinib (S1021; Selleck Chemicals) and defactinib (S7654; Selleck Chemicals).
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10

Cellular Signaling Pathway Assay

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Cell lysates were prepared using PLC cell lysis buffer (50 mM HEPES, pH 7.5, 150 mM NaCl, 10% glycerol, 1% Triton X-100, 1 mM EGTA, 1.5 mM magnesium chloride, 100 mM sodium fluoride supplemented with 1 mM vanadate, 10μg/ml leupeptin and 10μg/ml aprotinin). The following antibodies were used: α-ERK1/2, 1:2,000 dilution (9102L), α-phospho-ERK1/2, 1:2,000 dilution (9101L), α-AKT, 1:4,000 dilution (9272S), α-phospho-AKT (S473), 1:1,000 dilution (9271S) and α-phospho-AKT (T308), 1:1,000 dilution (9275S), all purchased from Cell Signaling Technology. Monoclonal α-FLAG-M2 antibody, 1:4,000 dilution (F3165–1MG) and α-FLAG polyclonal antibody, 1:2,000 dilution (F7425-.2MG), α-β-actin, 1:10000 dilution (A2066) were purchased from Sigma-Aldrich. α-Caspase-3 1: 1,000 (sc-56053) and α-Vinculin 1: 3,000 dilution (sc-73614) were purchased from Santa Cruz Biotechnology.
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