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4 protocols using cyclin d1

1

Immunohistochemical Evaluation of Tumor Markers

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Fresh tumors from each group were resected on Day 28 of the efficacy study, fixed in formalin, embedded, cut and mounted. The expressions of BRAFV600E (VE1) (Spring Bioscience, Pleasanton, CA, USA), anti-NF-κB p65 (4–2H22L23, Thermo Scientific), Ki-67 (Thermo Scientific) and cyclin D1 (Novus Biologicals, Littleton, CO, USA) were assessed by IHC and IF according as described previously (Kanotra et al. 2008 (link), Abd Elmageed et al. 2017 (link)).
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2

Biomarker Profiling of Skin and Plasma in Experimental Model

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The blood and dorsal skin samples were collected on the last experimental day. The plasma was separated from the blood samples via centrifugation at 3,000× g and 4 °C for 10 min, and the supernatant was used for further analysis. The levels of IL-10, TGF-β, IL-6, and IL-23 were determined using commercial enzyme-linked immunosorbent assay kits (IL-10, IL-6, and IL-23; MyBiosource, San Diego, CA, USA; TGF-β; Promega, Madison, MI, USA) as per the manufacturer’s instructions. We first rinsed 10 mg of dorsal skin in phosphate-buffered saline to remove excess blood before homogenization. The samples were then homogenized at 1500 × g and 4 °C for 15 min, and the supernatant was collected for assaying. The levels of Ki67, cyclin D1, and neutrophil elastase in the dorsal skin were determined using commercial enzyme-linked immunosorbent assay (ELISA) kits (Ki67; Wuhan Fine Biotech, Hubei, China; cyclin D1; Novus, Centennial, CA, USA; neutrophil elastase; R&D Systems, Inc., Minneapolis, MN, USA) according to the manufacturers’ instructions. The ROS levels in the dorsal skin were determined with an OxiSelectTM STA-347 in vivo ROS/RNS assay kit (Cell Biolabs, Inc., San Diego, CA, USA) in accordance with the manufacturer’s instructions. Optical density was measured using a microplate reader (Mdecular Devices, Sunnyvale, CA, USA).
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3

Immunoblot Analysis of Chick Embryonic Signaling

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This was performed as described (Flentke et al. 2011 ). Antibodies were directed against Snail2 (#27568, 1:1000; Abcam), CyclinD1 (#100–1939 1:1000; Novus), Bcl2 (#610538, 1:1000; BD Biosciences), PUMA (#SPC-166, 1:2000; StressMarq Biosciences, Victoria, BC), p53 (#SC-99, 1:2000; Santa Cruz), E-cadherin (#07–697, 1:1000, EMD Millipore), and GAPDH (#G8795, 1:50,000, Sigma, St. Louis MO). Vendors confirmed the immunizing peptide sequence is conserved in chick. For some western blots, bands were normalized against GAPDH and visualized using infrared dye-conjugated secondary antibodies and the Odyssey system (LiCor); GAPDH protein content is unaffected by alcohol in this model (Flentke et al. 2011 ). For other western blots, bands were instead normalized against total protein content per lane (Revert™ Total Protein Stain; LiCor, # 926–11021), visualized using chemiluminescence with horseradish peroxidase secondary antibodies, and imaged with the Azure Biosystems C600 system (Dublin, CA). Experiments were performed in triplicate and analyzed pools of 8–10 dissected headfolds per lane.
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4

Protein Expression Analysis in Frozen Tumors

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Tissues were snap-frozen in liquid nitrogen and stored at −80 °C. Pulverized frozen tumor samples were lysed in radioimmunoprecipitation assay (RIPA) buffer and the total proteins were extracted, separated, and transferred using standard procedures. Antibodies were purchased from BD Transduction Laboratories: SMARCB1 (1/500, 612110); Cell Signaling Technology: Akt (1/2000, #9272), P-Akt (Ser473) (1/2000, #4060), CDK4 (1/2000, #2906), CDK6 (1/2000, #3136), Cyclin D1 (1/3000, #2926), merlin (1/1000, #6995), p27 (1/1000, #2552), P-Rb (1/1000, #8516), S6 (1/1000, #2317), P-S6 (Ser 235/236) (1/4000, #4858), 4E-BP1 (1/2000, #9452); Novus Biologicals: GAPDH (1/5000, NB300-221), PTCH1 (1/1000, MAB41051), RB1 (1/50, NB120-3077), SHH (1/500, AF464); R&D Systems: GLI-1 (1/1000, AF3455); Santa Cruz Biotechnology: p16 (1/3000, sc-1207) and Thermo Scientific: p21WAF1 (1/1000, MS-387-P0). All uncropped scans of western blots are provided in Supplementary Fig. 7.
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