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9 protocols using nb100 56113

1

Immunofluorescence Analysis of Apoptosis Markers

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The expression of Bcl-2, Bax and cleaved caspase-3 proteins were investigated by immunofluorescence method as previously described [54 (link)]. In brief, the 4T1 cells were seeded in a 6-well plate and exposed to the DE-EDCP and cisplatin at concentration of 31.25 μM for 24 hours. After washing the cells twice with PBS, they were fixed in 4% paraformaldehyde at 25°C for 20 min. The cells were stained with rabbit polyclonal antibody specific for Bcl-2 (sc-783, Santa Cruz Biotech. Inc CA, USA), Bax (sc-493, Santa Cruz Biotech. Inc CA, USA) and active/cleaved caspase-3 (NB100-56113, Novus Biologicals, UK). After incubation, the cells were washed and treated with appropriate secondary antibody, goat anti-rabbit IgG FITC (Ab6717-1, Abcam, Cambridge, United Kingdom). The sections were mounted with ProLong Gold antifade reagent with DAPI (Invitrogen) and analyzed at x 200 magnification using fluorescent microscope (Olympus BX 51).
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2

Immunohistochemical Analysis of Mouse Xenografts

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The mouse xenograft tumors were fixed in paraformaldehyde for 1 h, followed by conventional paraffin‐embedding and sectioning (4 μm), and drying at 60℃. Paraffin sections were dewaxed with xylene and graded ethanol, and rinsed with distilled water. The slides were boiled in sodium citrate buffer (pH = 6.0, Solarbio, Beijing, China) for 10 min for antigen recovery. The sections were incubated in 3% hydrogen peroxide (Solarbio) for 10 min to block endogenous peroxidase activity and in 5% normal goat serum (ZGB‐BIO, Beijing, China) to block nonspecific protein binding sites. The sections were then incubated with antibodies against cleaved‐caspase‐3 (1:500; NB100‐56113, Novus Biologicals) and β‐Tubulin‐III (ab52623, RRID: AB_2819160, 1:800; Abcam) overnight at 4°C and subsequently incubated with goat antirabbit biotin‐conjugated secondary antibody (ab205718, 1:800; Abcam) for 0.5 h at room temperature. The reaction products were characterized using diaminobenzidine (Sigma‐Aldrich Chemical Company, St Louis, MO, USA). Nuclei were counted lightly with hematoxylin (Solarbio), and immunostaining was observed under a light microscopy (Olympus Optical Co., Ltd., Tokyo, Japan). The mean OD values of different sections were compared by Image‐pro Plus software.
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3

Pt(S-pr-thiosal)2 Induced Cell Apoptosis

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BCL1 cells were seeded in a six-well plate and exposed to the Pt(S-pr-thiosal)2 (0.05 mg/mL) for 12 h. Cells were washed twice with phosphate-buffered saline and then fixed in 4% paraformaldehyde at 25 °C for 20 min. For cell staining, rabbit polyclonal antibody specific for Bcl-2 (sc-783, Santa Cruz Biotech Inc., Santa Cruz, CA, USA), Bax (sc-493, Santa Cruz Biotech Inc.), and phospho NF-κB (ab131109 Abcam, Cambridge, UK) and active/cleaved caspase 3 (NB100-56113, Novus Biologicals) were used. After incubation, the cells were washed and treated with appropriate secondary antibody, goat anti-rabbit IgG FITC (Ab6717-1, Abcam). The sections were mounted with ProLong Gold antifade reagent with 4′,6-diamidino-2-phenylindole (DAPI; Invitrogen, Carlsbad, CA, USA). For the cell analysis, fluorescent microscope (Olympus BX 51) was used at 200× magnification.
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4

Immunohistochemical Analysis of Inflammatory Markers

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Formalin-fixed, paraffin-embedded mouse liver tissue sections were incubated with rabbit anti-TNF-α (ab66579, Abcam), rabbit anti-caspase-3, active/cleaved (NB100-56113, Novus Biologicals), anti-caspase 3 and rabbit anti-Gal-3 (ab53082, Abcam). Sections were visualized by rabbit-specific conjugate (Expose Mouse and RabbitSpecific HRP/DAB Detection IHC Kit; Abcam) and photomicrographed with a digital camera mounted on light microscope (BX51; Olympus). Virus-infected cells were visualized by anti-IE1 staining (MCMV protein expressed with early kinetics).
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5

Immunohistochemical Analysis of Apoptosis and Inflammation

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Immunohistochemistry for the paraffin sections was carried out using rabbit anti-caspase 3 (dilution 1:500; Cat. No. NB100–56113, Novus Biologicals, Littleton, CO, USA) as a marker for apoptosis [64 (link)], rabbit anti-TNF-α (dilution 1:200; Cat. No. NB600–587, Novus Biologicals, Littleton, CO, USA) and mouse anti-interleukin-6 (IL-6) (dilution 1:400; Cat. No. ab9324, Abcam, Cambridge, UK) as markers of inflammation [47 (link)]. Antigen retrieval was performed by heating in citrate buffer then quenching of endogenous peroxidase was processed using a peroxidase blocker. The sections were incubated with the primary antibodies (Ab) in a humidity chamber overnight followed by incubation with the secondary Ab for 45 min. Visualization of the reaction was performed using a 3,3′-Diaminobenzidine (DAB) detection kit with counterstain by Meyer hematoxylin. The area % of the (+ve) immunostaining for caspase3, TNF-α and IL-6 was measured using Leica Qwin 500 C image analyzer. The measures were obtained from 10 non-overlapping low power fields/section in each group.
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6

Immunohistochemical Analysis of Renal Proteins

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Preparation for immunohistochemical staining, including sections deparaffinization, and antigens retrieving was conducted. After blocking non-specific protein binding, sections were washed by PBS and incubated overnight (at 4 °C) with the primary rabbit antibody against rat; cleaved caspase-3 (NB100-56113) from Novus Biologicals, (dilution 1:1000), or Bcl-2 (ab194583) from Abcam Co (Cambridge, MA, USA), (dilution 1:100). Then, sections were washed by PBS, incubated with secondary antibody; HRP Envision kit (DAKO), for 20 min, washed by PBS, and positive immunoreactivities were developed by DAB visualization for 10 min and counter-staining with hematoxylin. Quantitative analysis was performed according to El-Nabarawy et. al. (2020) for determination of area percentage of immunohistochemical expression levels of indicated proteins, as estimated from six representative randomly selected fields in the tissue section using Leica application software (Leica Microsystems GmbH, Wetzlar, Germany) [33 (link)]. Statistical analysis of renal immuno-expressions in different groups was carried out using chi-squared "χ2" test. Representative microscopic images (× 400) were shown in the study.
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7

Histological Analysis of Murine Tissues

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Murine small intestinal paraffin sections were prepared and stained with hematoxylin and eosin (H & E) as described previously38 (link). Liver samples were fixed in 10 % neutral-buffered formalin, dehydrated through a graded alcohol series and xylene, and then embedded in paraffin blocks. Liver tissues embedded in paraffin were sectioned at 5 μm and stained with H & E, rat anti-mouse CD3 (clone 17A2, cat#100201, BioLegend, 0.1 μg/ml), rat anti-mouse/human CD45R/B220 (clone RA3-6B2, cat# 103202, BioLegend, 0.5 μg/ml), and purified rat anti-mouse/human Mac2 (clone M3/38, cat# CL8942AP, Cedarlane, Canada, 0.1 μg/ml). Aortic root sections were stained with Mac 2 antibody (clone M3/38, Cedarlane; 0.1 μg/ml), rat anti mouse α-Smooth Muscle Actin antibody (clone1A4, 0.2 μg/ml; Santa Cruz, sc-32251) and rabbit anti-mouse Caspase 3 antibody (active/cleaved; NB 100-56113, Novus Biologicals). Rat IgG2a control (CLCR2A00, Cedarlane), rat IgG2b (RTK4530, #400666, BioLegend) and rabbit polyclonal IgG (NBP2-24891, Novus Biologicals) were used as isotype controls. All staining were performed at the University of Virginia Cardiovascular Research Center Histology Core.
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8

Immunofluorescence Analysis of Bax and Cleaved Caspase-3

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The expression of Bax and cleaved caspase-3 proteins was investigated by the immunofluorescence method. The BCL1 cells were seeded in a 6-well plate and exposed to MBS at a concentration of 2 mg/mL for 24 h. After washing the cells twice with PBS (Phosphate Buffered Saline), they were fixed in 4% paraformaldehyde at 25 °C for 20 min. The cells were stained with a rabbit polyclonal antibody specific for Bax (sc-493, 100 µg/mL, Santa Cruz Biotech. Inc., CA, USA, dilution 1:1000) and active/cleaved caspase-3 (NB100-56113, 250 µL, Novus Biologicals, Abingdon, UK, dilution 1:1000). After incubation, the cells were washed and treated with an appropriate secondary antibody, goat anti-rabbit IgG FITC (ab6717-1, 1 mg/mL, Abcam, Cambridge, UK, dilution 1:2000). The sections were mounted with ProLong Gold antifade reagent with (4′,6-diamidino-2-phenylindole) DAPI (Invitrogen) and analyzed at × 200 magnification using a fluorescent microscope (Olympus BX 51).
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9

Immunohistochemical Analysis of Apoptosis and NF-κB Activation in Lung Tissue

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Deparaffinized paraffin sections of lung tissue were incubated with primary rabbit antibodies specific for the active form of caspase-3 (NB100-56113, Novus Biologicals) and phosphorylated NF-κB (ab131109 Abcam, Cambridge, UK). Histological sections were visualized using a rabbit detection kit (Expose Rb-Specific HRP/DAB Detection IHC Kit; Abcam) antibodies. The sections were photographed with a digital camera on a light microscope (Olympus BX51). Ten fields per cross-section (magnification 400×) were analyzed and the average number of positive tumor cells relative to the total number of tumor cells per cross-section was detected.
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