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Rneasy mrna extraction kit

Manufactured by Qiagen
Sourced in Spain

The RNeasy mRNA Extraction Kit is a laboratory tool designed for the purification of mRNA from various biological samples. It utilizes a silica-membrane-based technology to efficiently isolate and concentrate mRNA molecules from cells or tissue. The core function of this kit is to enable the extraction and purification of mRNA for downstream applications such as gene expression analysis and research.

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3 protocols using rneasy mrna extraction kit

1

RNA-seq Analysis of Transcriptome Profiles

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RNA was extracted using the Qiagen RNeasy mRNA extraction kit and sent to the Genome Analysis Core for sequencing as previously described (17 (link); 18 (link)). Libraries were prepared using the Illumina Stranded mRNA Prep and sequenced on an Illumina HiSeq 4000. Reads were aligned using STAR RNA-seq aligner to hg38 genome build. The gene and exon counts were generated by FeatureCounts. Differential expression analysis was carried out using a negative binomial generalized log-linear model in the edgeR R package. Sequencing data are available in the Gene Expression Omnibus database (GEO number GSE185957).
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2

Muscle Transcriptome Response to Exercise

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RNA was extracted from pulverized muscle biopsy samples at baseline (pre‐exercise) and 3.5‐h after exercise (post‐exercise) using the Qiagen RNeasy mRNA extraction kit and sent to the Mayo Clinic Genome Analysis Core for sequencing as previously described (Kunz et al., 2019 (link); Lalia et al., 2017 (link)). Briefly, libraries were prepared using the Illumina Stranded mRNA Prep and sequenced on an Illumina HiSeq 4000. Reads were aligned using STAR RNA‐seq aligner. Differential expression analysis was carried out using a negative binomial generalized log‐linear model in the edgeR R package. Gene set enrichment analysis was performed using Broads GSEA software. All gene sets that were negatively enriched with an FDR corrected p‐value (using the Benjamini‐Hochberg procedure) < 0.05 were reported.
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3

Polyp-22 Modulation of Chondrocyte Genes

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Passage 1 hAF cells were seeded at a seeding density of 30 000 cells/well and cultured to 70% to 80% confluency in six‐well cell culture plates in Ham's F‐12 medium supplemented with 10% FBS and 1% P/S (2 mL media/well). A low cell density was used for seeding and the cells allowed to expand before experimentation as the number of cells obtained from the human tissue was low due to the tissue amount procured. Cells were treated with fresh media containing 0, 0.5, and 1.0 mM polyP‐22. After 48 hour, hAF cells were washed with phosphate‐buffered saline (PBS−/−, calcium and magnesium free) and then lysed with RLT lysis buffer (Qiagen, Valencia, California) and RNA was isolated using RNeasy mRNA extraction kit (Qiagen Germantown, Maryland). Quantitative RT‐PCR was performed to measure relative gene expression of anabolic and catabolic genes of interest as previously described.32 Sequence specific primers were used for aggrecan (ACAN), collagen type I (Col1A1), and matrix metalloproteinases 1 and 3 (MMP‐1 and ‐3) (Table 2). After normalization with GAPDH expression levels, the relative gene expression was reported as relative fold expression compared to control, using the ΔΔCt method.38
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