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Puc19 dsdna 2686 bp plasmid

Manufactured by New England Biolabs

PUC19 dsDNA (2686 bp) plasmid is a commonly used cloning vector. It contains a multiple cloning site and the lac operon for blue-white screening. The plasmid is 2686 base pairs in length.

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2 protocols using puc19 dsdna 2686 bp plasmid

1

DNA Plasmid Damage Assay

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Stock solutions of
the test compounds
were prepared in DMSO (Fisher Scientific) and diluted in Milli-Q water.
A 400 ng portion of pUC19 dsDNA (2686 bp) plasmid (New England BioLabs)
was incubated with 50 μM of the test compounds or cisplatin
for different time intervals (15 min to 6 h) at 37 °C under continuous
shaking. In addition to the untreated control, a linear pUC19L vector
(ThermoFisher Scientific) was used. A 20 μL portion of the samples
was added to 4 μL of 6× DNA loading dye (ThermoFisher Scientific)
and loaded into the pockets of 1% agarose gel in 1× TBE buffer.
Electrophoresis was carried out at 60 V for 5 min, followed by 120
V for 90 min. Ethidium bromide (SERVA) staining was performed in 1×
TBE (0.75 μg/mL) for 20 min. Images were taken by the GelDoc-It
Imaging System Fusion Fx7 (Vilber Lourmat, Germany). For quantification
of the spots, ImageJ/Fiji1.46 was used.
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2

Plasmid DNA Damage Kinetics

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Stock solutions of 3a and 3d (5 mM) were prepared in MilliQ water and respective volumes were added to reaction solutions to obtain 50 µM of the test compounds. 0.1 µg µL -1 pUC19 dsDNA (2686 bp) plasmid (New England BioLabs) was exposed to the compounds for different time intervals (15 min to 6 h) at 37 °C under continuous shaking. 20 µL of the samples was added to 4 µl of 6x DNA loading dye (ThermoFisher Scientific) and loaded onto a 1% agarose gel in 1× TBE buffer. Electrophoresis was performed at 60 V for 5 min, followed by 120 V for 90 min. Ethidium bromide (Serva) staining was carried out in 1× TBE (0.75 µg ml -1 ) for 20 min. Images were taken using the GelDoc-It Imaging System Fusion Fx7 (Vilber Lourmat, Germany).
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