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6 protocols using mdia1

1

Western Blot Analysis of Adipogenic Markers

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Proteins 5–35 μg were loaded onto a 7%−14%
poly-acrylamide for gel electrophoresis and transferred to polyvinylidene
difluoride (Pvdf) membranes. After the membranes were immersed in a blocking
buffer (3% milk in TBST) for 30+ minutes at room temperature on a shaker, the
membranes were treated with primary antibody overnight at 4°C.
Antibodies: Pparg, (Cell Signaling); lamin B1, lamin A/C, Arp3 (Abcam); mDia1
(BD); mDia2 (ECM Biosciences, Versailles, Kentucky); Fabp4 (ProSci, Poway,
California); actin, (Santa Cruz); Adipoq (Affinity Bioreagents, Golden,
Colorado). Secondary antibody conjugated with horseradish peroxidase was
detected with Super Signal West Pico Plus chemiluminescent substrate (Thermo
Fischer Scientific, Waltham, Massachusetts).
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2

Investigating LPA Receptor Signaling in Breast Cancer Cells

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All cell lines were obtained from American Type Culture Collection. MCF10A cells were cultured as described (Debnath et al., 2003). MCF7 and HEK293 cells were cultured in Dulbecco's modified Eagle's medium (DMEM) plus 10% heat inactivated FBS. Cell Dissociation Buffer, enzyme-free, PBS-based (Life Technologies). Oligonucleotides of small interfering RNA (siRNA) for LPA receptors, G protein alpha subunits, and RhoGEFs were synthesized by QIAGEN. Oligonucleotides of siRNA for mDia1 were purchased from IBA GmbH. LPA (1-Oleoyl Lysophosphatidic Acid) and EDG family inhibitor Ki16425 were purchased from Cayman Chemical Company. Poly (2-hydroxyethyl methacrylate) (PolyHEMA) was purchased from Polysciences Inc. Antibodies against EDG4 were from Assay Biotechnology; LPAR receptors, Ezrin and LARG from Santa Cruz Biotechnology; PDZ-RhoGEF from IMGENEX; pMLC2 from Sigma and mDia1 from BD Biosciences. pCMV6-XL5 LPAR2 expression vector were purchased from OriGene (SC117226). pWPXL-based lentiviral expression vectors for H2B, LPAR2, Gα12, and Gα12Q/L were generated using standard PCR-based procedures or in the case of LifeAct-GFP were a kind gift from Oliver Fackler. Delipidized FCS was from Bio&SELL e.K.
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3

Oocyte Protein Expression Analysis

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A total of 15–50 oocytes were lysed in RIPA buffer (GenDOPET, Texas, USA) containing protease inhibitors and heated for 5 min at 100 °C. Total oocyte proteins were subjected to electrophoresis on a 10% SDS-PAGE gel. The separated proteins were transferred to PVDF membranes, which were pretreated with methanol. The membranes were blocked in 5% skim milk and incubated with primary antibodies as follows: HDAC6 (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), Acetyl-α-tubulin (Thermo Fisher Scientifc, Rockford, IL, USA), mDia1 (BD Biosciences, San Jose, CA), and mTOR (2983), PI3 Kinase p110α (4249), Phospho-Akt (4060), Akt (4685), Phospho-p44/42 (9101) and p44/42 (9102), all purchased from Cell Signaling Technology (Beverly, MA, USA). After three washes in TBST, the blots were then incubated with anti-rabbit or anti-mouse IgG antibody conjugated to horseradish peroxidase for 1 h. The protein bands were visualised using an SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientifc, Rockford, IL, USA). The membrane was then washed and reblotted with an actin antibody as an internal control. Densitometric quantification was performed using the ImageJ software (NIH, Bethesda, Maryland).
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4

Western Blot Analysis of Cell Proteins

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Whole cell lysates were prepared with lysis buffer (150 mM NaCl, 50 mM Tris HCl, 1 mM EGTA, 0.24% sodium deoxycholate, 1% Igepal, pH 7.5) containing 25 mM NaF and 2 mM Na3VO4, aprotinin, leupeptin, pepstatin, and phenylmethylsulfonyl fluoride were added before each lysis. Fractionated or whole lysate proteins of 5–20 μg were loaded onto a 7%–10% poly-acrylamide gel for chromatography and transferred to polyvinylidene difluoride membrane. After blocking, primary antibody was applied overnight at 4°C including antibodies against Bglap, Pparg, PARP1 (Cell Signaling, Danvers Mass); Runx2, mDia2, MKL-1, importin-9, Arp3 (Abcam), mDia1 (BD), LDHA (Millipore, St Louis, Mo), Fabp4 (ProSci, Poway, CA), actin, beta-tubulin (Santa Cruz, Dallas TX), Adipoq (Affinity Bioreagents, Golden, CO). Secondary antibody conjugated with horseradish peroxidase was detected with ECL plus chemiluminescence kit (Amersham Biosciences, Piscataway NJ). The images were acquired with an HP Scanjet and densitometry determined using NIH ImageJ, 1.37v.
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5

Antibody Characterization for Cell Biology

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Our cofilin antibody was generated in rabbit by Covance from purified human cofilin; sera from inoculated rabbits rather than purified antibody was used in immunofluorescence assays. Commercial primary antibodies used in this study follow: anti-tubulin (Sigma, Cat. No. T29026), anti-fibrillarin (Abcam, Cat. No. ab4566), H3K9me3 (Abcam, Cat. No. ab8898), anti-53BP1 (Novus Biologicals, Cat. No. NB100-305), anti-H2AX pS139 (Millipore, Cat. No. 05–636, Clone JBW301), IPO9 (Abcam, Cat. No. ab52605), mDia2 (ECM Biosciences, Cat. No. DP3491), mDia1 (BD Biosciences, Cat. No. 610848), FMN2 (Abnova, Cat. No. H00056776-A01), Spire-1 (Aviva Systems Biology, Cat. No. OAAB12896), Spire2 (ThermoFisher—Pierce, Cat. No. PA5-24099).
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6

Comprehensive Immunofluorescence Staining Protocol

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Following primary antibodies were used in this study: lamin B (Santa Cruz cat. no. sc-6217); filamin (Santa Cruz cat. no. sc-28284); alpha-actinin-4 (Abcam cat. no. ab96866); spectrin (Sigma Aldrich cat. no. S1390); paxillin (Millipore cat. no. 05-471); vinculin (Sigma Aldrich cat. no. V4505); mDia1 (BD Biosciences cat. no. P66520-050); SUN2 (Abcam cat. no. ab124916); emerin (Abcam cat. no. ab40688); Arp3 (Welch et al. 1997 (link)); cofilin (Abcam cat. no. ab11062); P-cofilin (Cell Signaling cat. no. 3313); Arp6 (Sigma Aldrich cat. no. R35554); Arp5 (Kitayama et al. 2009 (link)); Arp8 (Aoyama et al. 2008 (link)); Brg1 (Abcam cat. no. ab70558); hnRNP U (Santa Cruz, clone 3G6); H3K9Me2 (Millipore cat. no. 17-648); H3K4Me2 (Millipore cat. no. 07-030); CTD-phosphoS2 (Abcam cat. no. ab24758); RPA194 (Santa Cruz, cat. no. sc-28714); and BrdU (Sigma Aldrich, clone BU-33).
Secondary antibodies used in this study are donkey anti-rabbit IgG conjugated with Alexa Fluor 568 (A10042), goat anti-mouse IgG conjugated with Alexa Fluor 647 (A21236) and donkey anti-goat IgG cojugated with Alexa Fluor 647 (A21447) all purchased from Life Sciences.
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