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5 protocols using f9423

1

MDM2 Protein Expression in Cell Lines

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Unless otherwise stated, cell culture reagents were purchased from Gibco (ThermoFisher Scientific). A549 cells were cultured in Dulbecco’s Modified Eagle Medium: Nutrient Mixture F-12 (DMEM:F12) with HEPES, supplemented with 10% foetal bovine serum (JRH Biosciences #12003C or Sigma-Aldrich #F9423) and 2 mM GlutaMAX™ or 2 mM L-Glutamine. HEK-293 cells were cultured in DMEM supplemented with 10% FBS (Sigma-Aldrich #F9423) and 2mM L-glutamine. MCF10A cells were cultured in DMEM:F12 containing 5% horse serum (#16050-122), 20 ng/mL epidermal growth factor (EGF, Peprotech), 0.5 mg/mL hydrocortisone (Sigma-Aldrich #H-0888), 100 ng/mL cholera toxin (Sigma-Aldrich #C-8052) and 10 μg/mL insulin (available from pharmacy). The Flp-In™ T-Rex™ U2OS cells were cultured in DMEM supplemented with 10% FBS and 1 μg/mL Blasticidin (Melford). For expression of MDM2 protein, the cDNA for the human full-length MDM2 sequence was cloned into the pcDNA5 vector (ThermoFisher Scientific) to enable expression of the proteins with an N-terminal 2xFLAG-PreScission protease site-His6 (FLAG) tag. The plasmid was then transfected into the cells for stable integration into the host genome and selected using Hygromycin B (Formedium) according to the manufacturers’ instructions.
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2

Tissue Sampling and Storage for Tumor Analysis

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Fresh tumor and adjacent normal tissue were collected in separate tubes containing transfer media (RPMI; Thermo Fisher Scientific, Waltham, MA, USA containing 10% (v/v) faetal bovine serum (FBS); Sigma-Aldrich, St. Louis, MO, USA, F9423) and delivered to the laboratory on ice. Tissue was cut into multiple 2 × 2 millimeter (mm) fragments. Two normal and two tumor fragments were snap frozen and archived. One normal and one tumor fragment were fixed in 10% neutral-buffered formalin (Australian Biostain, Victoria, Australia, ACFG) at room temperature (RT) for histopathological analyses. Two normal and two tumor fragments were transplanted into individual mice. The remaining tumor fragments were cryopreserved in 90% (v/v) FBS (Sigma, F9423) containing 10% (v/v) dimethyl sulfoxide (DMSO; Sigma, D2650).
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3

Isolation and Culture of Mouse Embryonic Fibroblasts

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To generate MEFs, C57BL/6 Mdm2C305F/C305F mice or their wild-type C57BL/6 littermates were plug mated. Mouse embryos were isolated at E13.5 and prepared as similarly described (Durkin et al., 2013 (link)), digesting individual embryos in 1 mL of 0.25% trypsin-EDTA (Gibco) containing 100U DNaseI (Sigma-Aldrich #D5025) at 37°C at 10% CO2 for 15 minutes. To stop the digestion, 1 mL of DMEM (Gibco) supplemented with 10% FBS (Sigma-Aldrich #F9423), 1x Antibiotic-Antimycotic, 2 mM GlutaMAX™ and 1x MEM non-essential amino acids (NEAA) was added, and the cells were centrifuged at 300 x g for 5 minutes to pellet the cells. Cell pellets were then resuspended and cultured in fresh DMEM containing 10% FBS, 1x Antibiotic-Antimycotic, 2 mM GlutaMAX™ and 1x MEM NEAA at 37°C.
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4

Isolation of Mouse Bone Marrow Cells

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Mouse bone marrow cells were isolated by flushing the femurs and tibias with High Glucose DMEM (Sigma-Aldrich, D5796; St. Louis, MO, USA) containing 15% FBS (Sigma-Aldrich, F9423; St. Louis, MO, USA) supplemented with penicillin/streptomycin (P/S) (Sigma-Aldrich, P4333; St. Louis, MO, USA) into 50 mL tubes capped with 70 μM cell strainers. The cells were pelleted by centrifugation at 1000 rpm for 5 min. The pellets were resuspended with Red Blood Cell Lysis Buffer (Sigma-Aldrich, Z642843; St. Louis, MO, USA) and incubated for 5 min at room temperature before being neutralised with 9 mL DMEM (15% FBS + P/S). The cells were pelleted by centrifugation at 1000 rpm, 5 min, before being resuspended in 9 mL DMEM (15% FBS + P/S) and aliquoted into a 6-well cell culture plate. The bone marrow cells were incubated at 37 °C, 5% CO2 for 3–4 days to allow attachment, at which time the media was replenished with fresh DMEM (15% FBS + P/S).
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5

Holo-tomographic Imaging of Live Cells

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Holo-tomographic video imaging was performed on a NanoLive (Switzerland) 3D Cell Explorer fluo (AXT Pty Ltd., Warriewood, NSW) equipped with a NanoLive live cell incubator (AXT Pty Ltd). 1 × 104 cells were seeded into a FluoroDish cell culture dish 35 mm, 23 mm well (World Precision Instruments, FD35) and maintained in phenol red free DMEM medium (Sigma-Aldrich, D1145) supplemented with 10% fetal bovine calf serum (Sigma-Aldrich, F9423), 2 mM glutamine (Sigma-Aldrich, G7513) and 1% penicillin-streptomycin for 48 h. Immediately prior to imaging the medium was removed and replaced with 400 μL of the same medium, followed by transfer to the live cell incubator chamber of the 3D Cell Explorer. Cells were incubated at 37 °C, 5% CO2 and 100% humidity for the duration of the time-lapse. Three dimensional holo-tomographic images were captured every 20 s for the duration of the time-lapse using the Nanolive STEVE software. For File S7 the center plane of each 96 slice stack was exported after capture using the built in STEVE export wizard as an .avi movie file. These files were exported at 5 frames per second (100x actual speed) to visualize cellular dynamics.
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