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7 protocols using isohexanoic acid

1

SCFA Analysis in Fecal Samples

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HPLC-grade SCFA standards (>99% pure), including acetic acid, propionic acid, butyric acid, isobutyric acid, valeric acid, isovaleric acid, hexanoic acid, isohexanoic acid, and 1,3-butanediol (the internal standard), were purchased from Sigma-Aldrich (St. Louis, MO, USA). The SCFAs in feces were determined using a gas chromatograph with some modification. Briefly, 0.5 g of feces was placed in a 10 mL centrifuge tube and mixed with 10 mL of ultrapure water. After homogenization and centrifugation, the fecal supernatant was diluted with ultrapure water and filtered through a 0.22 μm filter. Filtrates were placed in headspace vials and injected into the Agilent 8890B gas chromatography system coupled to an Agilent 5977B/7000D mass selective detector with an inert electron impact (EI) ionization source at Majorbio Bio-Pharm Technology Co., Ltd. (Shanghai, China). The Dionex ICS-3000 ion chromatography system with an auto-sampler was used. The column used was the HP-FFAP (30 m × 0.25 mm × 0.25 µm) capillary column. The injector was split at 1:10. The carrier gas was nitrogen at a flow rate of 1.0 mL/min. Peaks corresponding to each SCFA were quantified using standard curves.
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2

Quantification of Fecal Short-Chain Fatty Acids

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Fecal SCFA analysis was conducted using gas chromatography-mass spectrometry (GC-MS). An Agilent HP-INNOWax GC-MS (Agilent Technologies, Inc., Santa Clara, CA, USA) was used for quantification. To 50 mg of sample, 50 μL of 15% phosphoric acid (China National Pharmaceutical Group Co., Ltd., Beijing, China), 100 μL of 125 μg/mL internal standard solution (isohexanoic acid, >98%; Sigma), and 400 μL of ether (China National Pharmaceutical Group) were added and homogenized for 1 min and centrifuged at 4°C at 12,000 rpm for 10 min, and the supernatant was taken for the test. Acetic acid (AA, >99.5%), propionic acid (PA, >99.0%), isobutyric acid (IBA, >99.0%), butyric acid (BA, >99.0%), isovaleric acid (IVA, >99.0%), and valeric acid (VA, >98.0%) were purchased from Sigma. Caproic acid (CA, ≥99.5%) was purchased from Aladdin Shanghai Biochemical Technology (Shanghai, China).
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3

Investigating Colonic Inflammation and Gut Microbiome

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Sweet tea was collected from Sichuan Mu Jiang Ye Ke Tea Co., Ltd. (Chengdu, China). Dextran sulfate sodium salt (DSS, molecular weight 36–50 kDa); salicylazosulfapyridine (SASP); and standards for SCFAs, including acetic acid, propanoic acid, isobutyric acid, butyric acid, isovaleric acid, valeric acid, caproic acid, and isohexanoic acid, were purchased from Sigma-Aldrich (St. Louis, MO, USA). The commercial kits for myeloperoxidase (MPO), glutathione (GSH), malondialdehyde (MDA), superoxide dismutase (SOD), TNF-α, transforming growth factor-β (TGF-β), IL-10, IL-6, IL-1β, LPS, and urine fecal occult blood were obtained from Nanjing Jiancheng Bioengineering Co., Ltd. (Nanjing, China). The rabbit polyclonal antibodies specific to Zonula occludens-1 (ZO-1), Occludin, G-protein-coupled receptor 43 (GPR43), G-protein-coupled receptor 109A (GPR109A), histone deacetylase 3 (HDAC3), and NF-κB p65 were obtained from Abcam (Shanghai) Trading Co., Ltd. (Shanghai, China).
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4

Quantitative Analysis of Short-Chain Fatty Acids in Mice Feces

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Analysis concentrations of SCFA was performed with reference to the method of Hsu et al. with slight modifications [32 (link)]. About 20 mg of mice feces were mixed with 800 μL 0.5% phosphoric acid solution which contained 2-ethyl butyric acid (internal standard) at the concentration of 10 μg/mL. After ultrasound and centrifugation, the supernatant was extracted with n-butanol. The qualitative and quantitative analysis of SCFA was accomplished using a GC/MSD system with an Agilent HP-FFAP capillary column (30 m × 0.25 mm × 0.25 µm) (Agilent Technologies Inc., Palo Alto, CA, USA). A mix of propionic acid, acetic acid, butyric acid, isobutyric acid, valeric acid, isovaleric acid, hexanoic acid, and isohexanoic acid (25 μg/mL each, Sigma, Saint Louis, MO, USA) was used for calibration. We calculated the concentration of these SCFA based on standard solutions corrected by internal standard and the integral area of sample curves.
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5

Quantifying Cecal Short-Chain Fatty Acids

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The levels of acetic acid, propionic acid, and butyric acid in the cecal contents of mice were detected by a gas chromatography Agilent 7890B (Agilent; Santa Clara, CA, USA). Briefly, cecal contents (100 mg each) were homogenized with 100 μL phosphoric acid (15%; Sinopharm, Shanghai, China), 100 μL isohexanoic acid (50 μg/mL; Sigma-Aldrich, St Louis, MO, USA), and 400 μL ether (Sinopharm) for 1 min. After centrifugation, the supernatants were collected and detected via gas chromatography. The SCFA levels in the samples were calculated by standard curves made using acetic acid, propionic acid, and butyric acid standards (Sigma-Aldrich).
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6

Quantification of Short-Chain Fatty Acids

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The analytical standards acetic acid (C2, purity ≥ 99%), propionic acid (C3, purity ≥ 99,5%), i-butyric acid (iC4, purity ≥ 99%), n-butyric acid (C4, purity ≥ 99%), isovaleric acid (iC5, purity ≥ 98%), valeric acid (C5, purity ≥ 99%), isohexanoic acid (iC6, purity ≥ 99%), hexanoic acid (C6, purity ≥ 98%), octanoic acid (C8, purity ≥ 98%), NaH2PO4, and (NH4)2SO4 were purchased by Sigma Aldrich. Ethyl ether was purchased by J.T. Baked (Phillipsburg, NJ, USA), sulfuric acid, and NaCl were purchased from Carlo Erba (Milan, Italy). The water used was deionized (resistivity above 18 MΩ cm).
Standard stock solutions were prepared at different concentrations by dissolving pure analytical standards (200 µL for C2 and 10 µL for the other analytes, C3–C8) in diethyl ether until reaching 10 mL in volumetric flasks. The mother stock solutions were then used to prepare mix standard solutions, by performing proper dilutions.
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7

Fecal SCFA Quantification by GC-MS

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Gas chromatography–mass spectrometry (GC-MS) Agilent 6890N/5975B (Agilent Technologies, Inc., United States) was used to detect fecal SCFAs levels. Briefly, 100 mg of feces were added to 100 μl of 15% phosphoric acid (China National Pharmaceutical Group Co. Ltd., Beijing, PR China), 100 μl of a 250 μg/ml internal standard (isohexanoic acid; Sigma) solution, and 400 μl of ether (China National Pharmaceutical Group Co. Ltd., Beijing, PR China) and homogenized for 1 min. After centrifugation at 12,000 rpm at 4°C for 10 min, the supernatant was collected and tested on the GC-MS instrument. Acetic acid (AA), propionic acid (PA), isobutyric acid (IBA), butyric acid (BA), isovaleric acid (IVA), and valeric acid (VA) were purchased from Sigma. Caproic acid (CA) was purchased from Aladdin (Aladdin Shanghai Biochemical Technology, Shanghai, PR China).
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