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31 protocols using elan 6000

1

Characterization of Nanoparticles by Spectroscopy

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ATR-FTIR spectra were recorded at a resolution of 4 cm−1 over the 4000–700 cm−1 range using a NICOLET IZ10 spectrometer (Thermo Scientific, Waltham, MA, USA) equipped with a germanium ATR crystal and a single reflection angle 45° horizontal ATR accessory. The UV-Vis spectroscopic analysis was performed using a DR 3900 UV-Vis spectrophotometer (Hach Lange, Loveland, CO, USA) equipped with 1 cm quartz cuvettes. High-resolution transmission electron microscopy (HR-TEM) analysis was carried out using transmission electron microscopy/scanning transmission electron microscopy (TEM/STEM) system (Titan 80-300, FEI, city, state abbrev if USA, country) with a super twin-lens operated at 300 kV and equipped with an annular dark field detector. The presence of various elements in the obtained nanoparticles was analysed using energy-dispersive X-ray spectroscopy (EDX, Aztec, Oxford Instruments, Abingdon, UK). ICP-MS (Elan 6000, Perkin Elmer, Waltham, MA, USA) was used to determine the Pd/Pt concentration.
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2

Monitoring Beef Calf Selenium Levels

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Blood samples were collected from the jugular vein of weaned beef calves, at baseline and after 2, 4, 6 and 8 weeks of alfalfa hay consumption, into evacuated EDTA tubes (2 mL; final EDTA concentration 2 g/L; Becton Dickinson, Franklin Lakes, NJ) and stored on ice until they were frozen at -20°C to measure whole blood Se (WB-Se) concentrations. Selenium concentrations were determined by a commercial laboratory (Utah Veterinary Diagnostic Laboratory, Logan, UT) using an inductively coupled argon plasma emission spectrometry method. Selenium was measured using an ICP-MS (ELAN 6000, Perkin Elmer, Shelton, CT) method as previously described [3 (link)].
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3

Neonatal Whole-Blood Selenium Measurement

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Whole-blood samples were collected within 12 to 48 h of birth (day 0), at 14 days of age, at 60 days of age, and again at weaning, into evacuated 2-mL EDTA tubes (final EDTA concentration of 2 g/L; Becton, Dickinson and Company, Franklin Lakes, NJ, USA) and stored on ice until they were frozen at −20 °C. Frozen whole-blood samples were shipped on dry ice to Utah Veterinary Diagnostic Laboratory, a commercial laboratory in Logan, UT, to measure concentrations of WB-Se. In short, 750 µL of whole blood was mixed with 750 µL of trace-metal-grade nitric acid in a 10-mL digestion tube. Next, the blood was digested for 2 h at 90 °C in the cap-sealed tube. After cooling down, the contents were transferred to another trace-metal-free tube. Next, 1 mL of the digested blood was transferred into another trace-metal-free tube, which already contained 9.0 mL of ultrapure water, to form a 5% nitric acid matrix. After vortexing, the sample was analyzed on an inductively coupled argon plasma emission spectrometer (ICP-MS; ELAN 6000, Perkin Elmer, Shelton, CT, USA) using a 4-point standard curve. A pooled QC sample dissolved in a 5% nitric acid matrix was analyzed after every 5 samples. If the pooled QC sample fell within ±5% of the reference value, the WB-Se analysis was considered acceptable.
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4

Structural and Compositional Analysis of Nanoparticles

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TEM images were obtained on a JEM-1200EX (JEOL) transmission electron microscope (TEM) at 100 kV. HRTEM images were recorded via a JEOL JEM-2100F transmission electron microscope operating at 200 kV. Powder XRD patterns were recorded on a Bruker AXS D8-Advanced X-ray diffractometer with Cu Kα radiation (λ=1.5418 Å). The tested current and voltage were 40 mA and 40 kV, respectively. A 2θ ranging from 25° to 90° was covered in steps of 0.02° with a count time of 2 s. Elemental composition of the NPs was determined using an inductively coupled plasma mass spectrometer (ICP-MS, Perkin Elmer Elan-6000). The X-ray photoelectron spectrum (XPS) was performed on ESCALAB 250 (Thermo-Fisher Scientific, USA).
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5

Whole-rock Geochemical Analyses: Techniques

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Whole-rock geochemical and mineral composition analyses were carried on at the SKLaBIG GIGCAS. Major elements were measured on individual minerals using a JEOL JXA-8100 Superprobe with an accelerating potential of 15 kV and sample current of 20 nA. Whole-rock major element oxides (wt.%) for whole-rock powders were determined using a Varian Vista PRO ICP-AES using wavelength X-ray fluorescence spectrometry with analytical errors better than 2%. Whole-rock trace elements, including the REEs, were analysed using a Perkin-Elmer ELAN 6000 inductively-coupled plasma source mass spectrometer (ICP-MS). Analytical precision for most elements is better than 3%. Whole-rock Sr and Nd isotopic compositions of selected samples were determined using a Micromass Isoprobe multi-collector mass spectrometer (MC-ICP-MS). The 87Sr/86Sr ratio of the NBS987 standard and 143Nd/144Nd ratio of the Shin Etsu JNdi-1 standard measured were 0.710288±28 (2σ) and 0.512109±12 (2σ), respectively. All measured 143Nd/144Nd and 86Sr/88Sr ratios are fractionation corrected to 146Nd/144Nd=0.7219 and 86Sr/88Sr=0.1194, respectively.
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6

Inductively Coupled Plasma Mass Spectrometry for Seawater Analysis

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Fish water was prepared as 0.006% (w/v) instant ocean® aquarium sea salt dissolved in Milli-Q water (Millipore, Schwalbach, Germany). The samples were diluted by 1:10 and 1:100 with 2% HNO3 solution and measured by inductively coupled plasma mass spectrometry (ICP-MS, ELAN 6000; PerkinElmer, Rodgau-Jügesheim, Germany; Table S1) in a semi-quantitative mode.
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7

Chlorophyll, Mineral Nutrient Analysis in Plants

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The chlorophyll index in young expanded leaves was measured by a SPAD meter 520 (Minolta, Osaka, Japan). Chlorophyll was extracted from shoot samples in N, N’-dimethyl formamide (Merck) after 24 h incubation at 4°C (Porra et al., 1989 (link)). Aliquots from shoot samples were ground and fractionated into a water-soluble and water-insoluble fraction, representing readily available nutrient pools (Shi et al., 2012 (link)). Solutions were then digested for mineral element analysis. Dried shoot and root samples were ground, wet digested in HNO3 and Fe and P concentrations were determined by ICP-OES (Elan 6000; PerkinElmer). Fe and P concentrations in fractionated samples, in xylem sap, or cell wall fractions were determined by high-resolution ICP-MS (Thermo Element2, Bremen, Germany). Apoplastic root Fe was removed as described in von Wirén et al. (1995) (link) and measured according to Bienfait et al. (1985) (link).
Xylem sap was collected as described by Meda et al. (2007) (link). Stems were cut 2–3 cm above the base and silicon tubes were placed on top of the hypocotyl. The first 100 μl of the xylem bleeding sap were discarded before the sap was collected for a period of 3 h, kept on ice and finally stored at -20°C.
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8

Elemental Analysis of Tissue and Parasite Samples

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After defrosting, tissue samples and parasites were weighed and placed in 30 mL Teflon® vessels (MarsXpress; CEM GmbH, Kamp-Lintfort Germany). Some of the parasite samples from different fish of the same year were pooled together in order to reach a wet weight of at least 10 mg. Subsequently, a mixture of 1.3 mL 65% nitric acid (HNO3 sub boiled) and 2.5 mL 30% hydrogen peroxide (H2O2 suprapure Merck, Germany) was added and vessels were heated up to 170°C for 40 min using a MARS 6 digestion system (CEM GmbH, Kamp-Linfort Germany). After digestion, the clear sample solution was brought to a volume of 5 mL using Mili-Q water.
Concentrations of nine elements (As, Cd, Co, Cu, Fe, Mn, Pb, Se, Zn) were measured using a quadrupole ICP-MS system (Elan 6000, Perkin Elmer, USA). Instrument calibration was performed using a dilution series (in range 0.1–100 ppb) from standard solutions (Merck, Germany, for details see Nachev et al., 2013 (link)). In order to prove the quality of our analytical procedure, fish tissue reference materials (IAEA-407, DORM3 and DOLT3) were analysed and accuracy rates were calculated.
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9

Trace Element Analysis of Fasting Serum

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Blood samples were collected from the participants from antecubital veins under the fasting condition. Serum separation was performed by centrifugation at 1000× g for 10 mins. Samples were stored at −80 °C until the laboratory experiments. In this study, we assessed the hematological parameters of hemoglobin, packed cell volume (PCV), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH) and total red blood cells (RBC) counts. Compositions of blood were measured using an automated blood analyzer (Sysmex SE9000, Kobe, Japan).
Serum trace elements concentrations of Cd, Zn, Co, Cu and Se were measured using quadrupole, inductively coupled plasma mass spectrometry (ICP-MS) (SCIEX, ELAN6000, PerkinElmer Inc., Waltham, MA, USA). To prevent the contamination and disturbance, all the laboratory equipment in the trace elements measurement were washed with 15% nitric acid (Wako, Japan). The samples were measured against the multielement standard solution (TraceCERT, Sigma-Aldrich, LLC) by means of calibration curve. The measurements were externally validated against the certified reference material (Seronorm Trace Elements Serum L-1, Sero, Norway). All the values of trace elements measurements were within the acceptable ranges.
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10

Analyzing Total Cation Concentrations in Drug Samples

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Total cation concentrations of drug samples were measured after acid digestion [15 (link)], using Perkin Elmer-2800 Atomic Absorption Spectrophotometer (AAS) and Inductively Coupled Plasma Mass Spectrometer (ICPMS-Perkin Elmer Sciex ELAN-6000). Water soluble portion of each drug sample was obtained by filtering each aqueous suspension that had been kept in a horizontal shaker at room temperature for 5 h and then allowed to equilibrate for 19 h. Analysis of the solutions was carried out on AAS. The instrument was calibrated using analytical grade standard solutions of each element. The accuracy of the analytical procedure was evaluated by analysing reagent blanks routinely with samples and by triplication of sub-samples. Detection limits of different elements ranged 0.001–0.04 mg/L for AAS while detection limits of ICP-MS ranged 1–0.001 mg/L.
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