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60 protocols using anti snail

1

Comprehensive Protein Expression Analysis

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Western blot analysis was conducted as previously described [24 (link)]. The following primary immunoblotting antibodies were used: anti-GAPDH, anti-E-cadherin, anti-Fibronectin, anti-Vimentin, anti-Snail, and anti-c-Met (Epitomics, Burlingame, CA, USA), anti-β-catenin (Proteintech, Chicago, USA), anti-N-cadherin, anti-c-myc, anti-EGFR, anti-p-EGFR (Tyr1068), anti-GSK3β, anti-p-GSK3β (Ser9), anti-AKT (pan), anti-p-AKT (Ser473), anti-stat3, anti-p-stat3 (Tyr705) and anti-CREB1 (Cell Signaling Technology, Beverly, MA).
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2

Protein Expression Analysis via Western Blot

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The proteins were extracted from the treated cells using the RIPA lysis buffer method, and relatively quantified using BCA Protein Assay kit. The extracted proteins were loaded onto 10% SDS-polyacrylamide gels and electrophoresed fully. Subsequently, the separated proteins were transferred to a PVDF membrane using a wet transfer method. The membrane was blocked with 5% fat-free milk for 1 hour, and subsequently incubated with primary antibody (at 1:1000 ratio) at 4°C overnight. The membrane was washed 3 times (totally 30 min) with TBS-Tween buffer, and treated with secondary antibody (diluted with diluent as 1:5000 ratio) for 1 hour at room temperature. After washing 3 times with TBS-Tween buffer, the protein level was detected with enhanced chemi-luminescence (ECL) system (Pierce Biotechnology Inc., USA). The primary antibodies used are listed as follows: anti-GAPDH, anti-KLF4, anti-AKT, anti-p-AKT, anti-p21, anti-CCND1, anti-RB, anti-p-RB (Cell Signaling Technology, USA), anti-E-cadherin, anti-Fibronectin, anti-Snail, anti-Slug (Epitomics, USA).
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3

Comprehensive Immunoblotting Protocol

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Western blot analysis was conducted as previously described.14 (link) The following primary immunoblotting antibodies were used: anti-GAPDH, anti-E-cadherin, anti-Fibronectin, anti-Vimentin, anti-Snail, anti-AKT2, anti-p-AKT, anti-Rb, anti-p-Rb (Epitomics, Burlingame, CA, USA), anti-E2F1, anti-CDK4 and anti-DNMT1 (Proteintech, Chicago, IL, USA), anti-N-cadherin, anti-p27, anti-p21, anti-c-myc, anti-ERBB3, and anti-CCND1 (Cell Signaling Technology, Beverly, MA, USA).
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4

Western Blotting for EMT and Apoptosis

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Western blotting analysis was conducted as previously described [41 (link)]. The following primary immunoblotting antibodies were used: anti-GAPDH, anti-E-cadherin, anti-Fibronectin, anti-Vimentin, anti-Snail, anti-Slug, anti-Twist, anti-MMP-9, anti-MMP-2, anti-pro caspase-3, and anti-active caspase-3 (Epitomics, Burlingame, USA), anti-HIF-1α and anti-β-catenin (Proteintech, Chicago, USA), anti-N-cadherin (Cell Signaling Technology, Beverly, MA), and poly (ADP-ribose) polymerase (PARP) (Santa Cruz, CA).
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5

Antibody-Based Protein Detection Protocol

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Antibodies corresponded to anti-E-cadherin (mouse monoclonal (clone HECD-1); Invitrogen); anti-DSG2 (mouse monoclonal (clone DG3.10); Fitzgerald, Acton, MA); anti-β-actin (mouse monoclonal [clone AC-74]; Sigma-Aldrich, St. Louis, MI); anti-HA-tag (rabbit monoclonal [clone C29F4]; Cell Signaling, Danvers, MA); anti-Snail (rabbit polyclonal; Abcam, Cambridge, MA); anti-pAKT(Ser473) (rabbit monoclonal (clone 736E11); Cell Signaling); and anti-CK8/18 (guinea pig polyclonal; Progen, Heidelberg, Germany).
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6

Epithelial-Mesenchymal Transition Induction

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PT was attained from Calbiochem (San Diego, CA, USA) and dissolved in dimethylsulfoxide (DMSO; Sigma, St. Louis, MO, USA) to obtain a concentration of 100 μM and then saved at –20°C in the dark. Growth factor-reduced Matrigel was purchased from BD Biosciences (San Diego, CA, USA). Recombinant human TGF-β1 protein was acquired from R&D Systems (Minneapolis, MN, USA) and was dissolved in Ultra-Pure Bovine Serum Albumin (GenDEPOT, Hanam, Korea) to obtain a concentration of 20 μg/mL and then stored at –20°C. Anti-E-cadherin, anti-β-catenin, and anti-Vimentin were from Cell Signaling Technology (Danvers, MA, USA). Anti-Slug and anti- Snail were from Abcam (Cambridge, UK). Anti-Actin was obtained from Sigma-Aldrich (St. Louis, MO, USA).
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7

Immunofluorescence Staining of Cell Markers

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Cells were rinsed in PBS, fixed for 10 min with 4% formaldehyde in PBS and permeabilized 5 min with 0.1% Triton-X100. After fixation, coverslips were blocked in PBS containing 3% bovine serum albumin for 30 min at 37°C, before being processed for immunofluorescence.
Ki67 immunostaining on tissue slices has been performed following standard procedures.
Antibody dilution was as follows: anti-RhoA-GTP (NewEast Biosciences) 1:400; anti-Aurora B (AbCam ab3609) 1:100; anti-E-Cadherin (BD Biosciences Pharmingen, Bedford, MA) 1:50; anti-Snail (AbCam) 1:50; anti-Ki67 (BD Bioscience Pharmingen, USA; 1:25)
Secondary antibodies conjugated to Alexa-488 or Alexa-594 (Molecular Probes, Invitrogen, San Diego, CA; 1:400) were used as recommended by the supplier. Alexa Fluor 594 Phalloidin (a12381) (Thermo Fisher Scientific Inc., MA, USA) and Alexa Fluor 647–Phalloidin (from Invitrogen, Carlsbad, CA) were utilized for the staining of F-actin.
DNA was counterstained with 0.1 μg/ml 4'-6'-Diamidino-2-phenylindole (DAPI, Sigma-Aldrich, St Louis, MO).
All stained samples were analyzed under a Nikon Microphot-FXA microscope equipped with a CCD camera and digital images were acquired with Nikon NIS-elements software or using a Leica SP5 spectral confocal microscope.
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8

EMT Regulation and Src/STAT3 Signaling

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The study protocol was performed according to the principles of the Declaration of Helsinki and the ethics committee of the Affiliated Hospital of Jiangnan University, Wuxi, Jiangsu Province, China. Informed consent was obtained from all patients.
The following primary antibodies were purchased from Abcam (Cambridge, England): anti-E-cad, anti-Vim, anti-Snail, anti-N-cad, anti-Twist, anti-PCNA, anti-Bax, anti-Bcl-2, anti-ZEB1, anti-NEDD9, anti-Myb, and anti-GAPDH. The following primary antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA): anti-t-SRC, anti-p-SRC, anti-t-STAT3, and anti-p-STAT3. PP1, an SRC inhibitor, was purchased from Selleck Chemicals (Houston, TX, USA).
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9

Epithelial-Mesenchymal Transition Protein Analysis

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The cellular proteins were extracted 48 h after transfection. The cells in each well were lyzed in 50 μL of lysis buffer containing radioimmunoprecipitation assay (RIPA; 49.5 μL) and protease inhibitor cocktail (0.5 μL). Then, 30 μg of protein was resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) analysis and transferred onto a polyvinylidene difluoride (PVDF) membrane. The primary antibodies used were anti-E-cadherin (1:1,000; Abcam, Cambridge, UK), anti-N-cadherin (1:5,000; Abcam), anti-Vimentin (1:1,000; Abcam), anti-Slug (1:1,000; Abcam), anti-Snail (1:1,000; Abcam) and anti-GAPDH (1:10,000; Proteintech group, Inc., Chicago, IL, USA). The membranes were washed and then incubated with goat anti-rabbit horseradish peroxidase (HRP)-conjugated secondary antibody (1:10,000; Abcam) for 2 h at room temperature. The blots were visualized by enhanced chemilu-minescence detection.
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10

Quantitative Protein Analysis in Cardiac Fibrosis

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The total protein was extracted from the cultured CFs, and the levels were compared by immunoblotting the proteins based on their expression in the left ventricular peri-infarct area (PIA) of rats [32 (link)]. Antibodies used for probing were anti-FBW7, anti-Snail, anti-SMAD3/4, anti-phosphor-SMAD3/4 (Abcam, Cambridge, UK), anti-Twist, anti-TGF-β, anti-ubiquitin, and anti-actin antibody (Sigma-Aldrich Corp. St. Louis, MO, USA). The corresponding secondary antibodies were purchased from Stressgen Biotechnologies Corporation, Victoria, BC, Canada. Signals were used for detection using the Enhanced Chemiluminescence (ECL) kit (GE Healthcare, UK). Densitometry was employed to quantify the protein levels. β-actin was used as the loading control in the western blotting experiment for normalization.
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