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38 protocols using cbm 20a controller

1

Semipreparative HPLC for compound purification

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Semipreparative HPLC was carried out on a Shimadzu system consisting of DGU-20A5R degassing unit, LC-20AT solvent delivery pump, SIL-10AF autosampler, CBM-20A controller, CTO-20AC column oven, SPD-M20A diode array detector and FRC-10A fraction collector (all Shimadzu, Kyoto, Kinki, Japan). Stationary phase was a Luna C-10(2) column with 250 × 10 mm and 10 µm particle size (Phenomenex). Mobile phase consisted of water (A) and acetonitrile (B). Elution at 4 mL/min and 35 °C column temperature started at 40% B, rising to 100% B at 20.0 min. All compounds of interest eluted within this gradient, followed by varying plateaus of 100% B (0–5 min duration) for column cleaning and re-equilibration at 40% B. Injection volume was 200 µL.
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2

Semipreparative HPLC for compound purification

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Semipreparative HPLC was carried out on a Shimadzu system consisting of DGU-20A5R degassing unit, LC-20AT solvent delivery pump, SIL-10AF autosampler, CBM-20A controller, CTO-20AC column oven, SPD-M20A diode array detector and FRC-10A fraction collector (all Shimadzu, Kyoto, Kinki, Japan). Stationary phase was a Luna C-10(2) column with 250 × 10 mm and 10 µm particle size (Phenomenex). Mobile phase consisted of water (A) and acetonitrile (B). Elution at 4 mL/min and 35 °C column temperature started at 40% B, rising to 100% B at 20.0 min. All compounds of interest eluted within this gradient, followed by varying plateaus of 100% B (0–5 min duration) for column cleaning and re-equilibration at 40% B. Injection volume was 200 µL.
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3

HPLC Analysis of Organic Compounds

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Analytical HPLC was performed using a Shimadzu system consisting of LC-20AD pump, SPD-M20A diode array detector (DAD), CBM-20A controller, and the LC Solution software (Shimadzu Europa GmbH, Duisburg, Germany).
HPLC conditions were as follows: column: Phenomenex Kinetex C18, 5 µm, 150 × 4.6 mm column, flow rate: 1 mL min−1, solvent: 80% of 0.1% TFA in water and 20% of 0.1% TFA in acetonitrile, oven temp. 40 °C. The UV/Vis acquisition wavelength was set in the range of 190–300 nm.
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4

Automated Trapping Column Setup

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The instrumental set-up used is schematically illustrated in Fig. 2. Loading of the trapping column was performed with an Agilent Technologies 1100 Series pump at 10 L/min, equipped with a G1379A degasser (Agilent Technologies, Waldbronn, Germany). A Shimadzu CBM-20A controller recorded the UV trace from a Linear UVIS200 detector (Shimadzu, 'sHertogenbosch, The Netherlands). Valve 1 was a VICI EHMA electronically actuated valve, while valve 2 was a Cheminert C2-2000D air-actuated valve (Valco VICI International, Schenkon, Switzerland). 20 nL of sample were injected using a Cheminert C4-0344-.02 manual injector. Back-flushing of the column was performed using a ShimadzuLC-10A Dvp pump (pump P2) at 10 L/min. The trapping column was heated using a Waters column-heating module (Milford, MA, US) and cooled by immersion in an ice bath.
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5

HILIC-MS Analysis of Metabolites

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The HPLC setup was based on a Shimadzu system and consisted of a CBM-20A controller, a SIL-HTA auto sampler, two 10ADVP pumps, a DGU-14A degasser, a CTO-10AVP column oven and an SPD-10AVP variable wavelength detector. The setup was coupled to a micrOTOF time of flight mass analyzer (Bruker) and controlled by Compass HyStar (Bruker) version 3.2 and microTOFControl (Bruker) version 3.0. Measurement data was analyzed using Compass DataAnalysis version 5.0 R1 (Bruker).
The column oven was set to 40 °C. A SeQunant ZIC-HILIC (Merk KGaA, 150 × 2.1 mm, particle size 3.5 µM, pore size 200 Å) with a SeQunant ZIC-HILIC (Merk KGaA, 20 × 2.1 mm, particle size 5 µM, pore size 200 Å) precolumn was used as stationary phase. The mobile phase was a mixture of water (0.1 % NH4FA, pH 3.2) and acetonitrile. The injection volume was 5 µL. The following gradient was used with a flow rate of 150 µL/min (Table 2).
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6

HPLC Analysis of Coffee Polyphenols

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The quantitative and qualitative analysis of polyphenolic compounds was performed using the high-performance liquid chromatography (HPLC) method described earlier by Król et al. [47 (link)]. Briefly, a 3 mL sample of coffee brew was combined with 5 mL of 80% methanol. The mixture was then mechanically shaken and subjected to extraction in an ultrasonic bath (30 °C, 10 min). Following extraction, the sample was centrifuged (5 °C, 3780× g, 10 min) and was subsequently subjected to chromatographic analysis (HPLC-DAD using two LC-20AD pumps, a CBM-20A controller, an SIL-20AC column oven, and UV/Vis SPD-20 AV, and SPD-M20A spectrometers; Shimadzu, Kyoto, Japan).
Chromatographic separation was carried out on a Phenomenex Fusion-RP 80A column (Torrance, CA, USA, 250 mm × 4.60 mm). The mobile phase consisted of two components: (A) 90% water and 10% acetonitrile, and (B) 45% water and 55% acetonitrile, both with a pH of 3.0. The applied gradient program is detailed in Table 3. The injection volume was set at 100 μL, with the sample temperature maintained at 30 °C, and the column temperature also held at 30 °C. UV detection was performed at wavelengths: λ = 250 nm for flavonoids (quercetin-3-O-rutinoside, kaempferol-3-O-glucoside, quercetin, quercetin-3-O-glucoside, kaempferol, epigallocatechin) and λ = 370 nm for phenolic acids (gallic, chlorogenic, caffeic, salicylic).
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7

Size Exclusion Chromatography for Heparin Analysis

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Molecular weight and polydispersity of prepared heparin products was determined using size exclusion chromatography (SEC) as described earlier.38 (link),39 (link) TSK-GEL G3000PWxl size exclusion column (Tosoh Bioscience, Minato, Japan), maintained at 40°C with an Eppendorf column heater, was connected to a HPLC system consisting of a Shimadzu LC-10Ai pump, a Shimadzu CBM-20A controller and a Shimadzu RID-10A refractive index detector. The mobile phase consisted of 0.1 M NaNO3. A sample injection volume of 20 μL and a flow rate of 0.6 mL min−1 were used. The SEC chromatograms were recorded with the LCsolution Version 1.25 software and molecular weight properties determined using the “GPC Postrun” function. Heparin sodium oligosaccharides (2,687, 4,300, 5,375, 6,449, and 8,060 Da) (Iduron, Manchester, UK) were used as calibrants for heparin, HS and Lovenox. Hyaluronic acid (HA) (81, 130, and 44.3 kDa) was used as calibrant for heparosan. The molecular weight measurements for processed GAGs/starting materials was carried out in triplicates/duplicates.
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8

Quantitative Peptide Analysis in Tissues

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We used a developed LC‐HRAM method for the determination of peptide concentrations in mouse tissues (heart, kidney, liver, lung and spleen) and plasma. The linear range of the method was 0.200–50.0 µg ml−1. The heart, kidney, liver, lung and spleen tissue samples of mice were degraded into 20% tissue homogenate (tissue: homogenate solution = 1:4) with protease K. Then, 50 µl samples (standard curve samples, quality control samples, blank samples and unknown samples) were added to 10 µl of internal standard solution (500 µg ml−1 peptide in water) in addition to the blank samples. After vortex mixing, 100 µL of 5 mg mL−1 Protein K in water was added. After 1500 rpm for 1 min, multitube vortex mixing and tape winding were subsequently performed at 1000 rpm in a 65 °C constant temperature incubator overnight. For serum testing, a 10 µl sample (500 µg mL−1 peptide in water) of internal standard solution was added to the L sample (standard curve sample, quality control sample and blank sample). The next day, 1% FA in water and 200 µl of acetonitrile were added for protein precipitation, followed by mixing (1000 rpm, 5 min) and centrifuging (4000 rpm, 10 min). Then, 200 µl of supernatant was centrifuged at 1000 rpm for 1 min and then tested on a Shimadzu SIL‐30ACMP Autosampler with an LC‐30AD pump and a CBM‐20A controller (Shimadzu, Columbia, MD).
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9

Isolation of Bioactive Compounds by VLC and HPLC

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Fractions of crude extracts H and E were obtained through vacuum liquid chromatography (VLC) on silica gel (0.040–0.063 mm, Merck, Darmstadt, Germany) with solvent mixtures of increasing polarity (hexane, ethyl acetate, methanol, all Roth, Germany). Fractions were controlled by thin-layer chromatography (silica gel 60 F254, Merck, Darmstadt, Germany) and those of similar substance patterns combined to yield five fractions for H (H1–H5) and 9 fractions for E (E1–E9).
Four compounds were isolated by semi-preparative HPLC using a Shimadzu CBM-20A controller, LC-20AT solvent delivery module, SIL-10AF autosampler, CTO-20AC column oven, SPD-M20A diode array detector, and FRC-10A fraction collector (all Shimadzu, Kyoto, Japan).
All separations were performed on a Luna C18(2) column, 250 × 10 mm, 10 μm (Phenomenex, Torrance, CA, USA) via isocratic elution with a flow rate of 4 mL/min, 25 °C column temperature; 200 μL injection volume.
Compounds 1 and 7 were obtained from E8 (VLC fraction with hexane:ethyl acetate:methanol = 4:80:16) by isocratic elution with a solvent composition of acetonitrile:water = 70:30 (v/v). Compound 4 was isolated with acetonitrile:water = 63:37 (v/v) from H4 (hexane:ethyl acetate:methanol = 36:60:4) and compound 6 with acetonitrile:water = 75:25 (v/v) from E2 (hexane:ethyl acetate = 70:30).
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10

Tandem Mass Spectrometry Analysis Protocol

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Tandem mass spectrometry analyses
were carried out on a Shimadzu UFLC system (two LC20AD solvent pumps,
a CTO20A column oven set to 40 °C, a SIL20A autosampler, and
a CBM20A controller) coupled to an ion trap mass spectrometer (AmaZon
SL). The samples (20 μL) were analyzed using a C18 Phenomenex column (250 mm × 4.6 mm; 5 μm particle) eluted
with a mixture of water (solvent A) and acetonitrile (solvent B),
both of which contained 0.1% formic acid, at a flow rate of 1 mL min–1, as follows: 0–5 min (10% of B), 5–60
min (10–100% of B), 60–70 min (100% of B), 70–75
min (100–10% of B), and 75–85 (10% of B).
The
ion trap mass spectrometer was operated in positive and negative ionization
modes with the following parameters: capillary of 3.5 kV; end plate
offset of 500 V; nebulizer of 60 psi, dry gas (N2) with
a flow of 10 L min–1; dry temperature of 330 °C;
auto MS/MS acquiring data between m/z 50 and 1300, average of 3 spectra; enhanced resolution for scan
mode and UltraScan mode for MS/MS; spectral rate acquisition three
spectra per second; exclusion of a particular ion after three spectra
and released after 30 s. The mass spectrometer was controlled by Hystar
software (Bruker Daltonics Inc., USA).
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