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9 protocols using rat igg2b

1

Hematopoietic Stem Cell Enrichment and Analysis

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KU-63794 was obtained from CalBiochem and AZD8055 was purchased from Selleckchem. Phycoerythrin (PE) Cy7-conjugated anti-Sca-1 (Clone E13-161.7, rat IgG2a), APC-conjugated anti-c-kit (Clone 2B8, rat IgG2b), and purified rat anti-CD 16/CD32 (Clone 2.4G2, Fcγ receptor blocker, rat IgG2b) were purchased from BD Pharmingen (San Diego, CA). Both mouse and human Hematopoietic Progenitor (Stem) Cell Enrichment Set-DM were purchased from BD Biosciences. Recombinant mouse thrombopoietin (TPO) was purchased from R&D Systems (Minneapolis, MN). The rabbit anti-phospho-p70 S6 kinase (p70S6K) monoclonal antibody and active (cleaved) caspase-3 antibodies were purchased from Cell Signaling. The Alexa Fluor 594-conjugated goat anti-rabbit IgG antibody was purchased from Invitrogen (Carlsbad, CA).
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2

Multicolor Flow Cytometry of Immune Cells

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Cells (2 × 105) were stained with antibodies directed against major histocompatibility complex (MHC) class II (clone 2G9, rat IgG2a; 2.5 μg/ml), phycoerythrin (PE)-labelled hamster anti-mouse CD11c (IgG1κ; 4 μg/ml), PE-labelled anti-mouse CD11b (rat IgG2a; 10 μg/ml), or isotype controls (rat IgG2a, rat IgG2b or PE-labelled hamster IgG1κ; all from BD Biosciences, Princeton, New Jersey, USA), or with PE-labelled anti-mouse F4/80 (rat IgG2a; 4 μg/ml; E Biosciences, Hatfield, UK). For unlabelled primary antibodies, cells were stained subsequently with goat anti-rat IgG fluorescein isothiocyanate (FITC)-labelled polyclonal antibody (7 μg/ml; AbD Serotec, Kidlington, Oxford, UK). Incubations and washes were performed in 5% FCS in phosphate buffered saline (PBS) at 4 °C. Cells were re-suspended in sodium azide buffer (0.05% sodium azide and 1% FCS). A FACScalibur machine and CellQuest Pro software (BD Biosciences) were used to analyze 104 cells and PI was used to exclude dead cells from analysis and matching isotype control staining was used to set gates. Data were expressed as % positive cells and as mean fluorescence intensity (MFI).
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3

Flow Cytometry Analysis of Immune Cell Markers

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The fluorochrome-coupled monoclonal Abs used for flow cytometry in this study included CD69, FasL, Fas, CD3, NK1.1, CD19, F4/80, CD11c, CD11b, IgG2a, Rat IgG2b, ArH IgG2, ArH IgG1 (BD PharMingen, San Diego, CA, USA), granzyme B, perforin, CD205 and TLR9 (eBioscience, San Diego, CA, USA). The PE-conjugated, PBS57-loaded CD1d tetramer was a gift from the National Institutes of Health Tetramer Core Facility (Atlanta, GA, USA). After being incubated with Fc-blocker (2.4 G2; BD PharMingen), cells were stained with the indicated monoclonal Abs for surface antigens. Intracellular staining was performed using the Cytofix/Cytoperm Plus kit (BD Biosciences, San Diego, CA, USA) and Abs to TLR9, granzyme B and perforin. The stained cells were analyzed using a flow cytometer (FACScalibur; Becton Dickinson, Franklin Lakes, NJ, USA).
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4

Quantification of Alloantibodies and aCD20 Levels

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For measurement of BAFF (R&D Systems), and rat IgG2b concentrations (BD), we used commercially prepared kits per manufacture's instructions. For multiplex cytokine measurement, we used a kit from Life Technologies. For measurement of alloantibody and aCD20 concentrations, we developed cellular ELISAs modeled after the protocol developed by Fan (17 (link)). The major difference between the cellular ELISAs for alloantibody detection and measurement of aCD20 was the target cells. For the alloantibody protocol, donor splenocytes were the target, and for the aCD20 protocol, syngeneic CD19+ cells (purified by positive selection) were the target. Cells were incubated for one hour at 4°C in diluted sera, followed by one hour 4°C with monoclonal goat anti-mouse IgG-HRP for the alloantibody ELISA or anti-mouse IgG2a for the aCD20 ELISA. TMB was used as the substrate. Optical density was measured at 450nm. Known concentrations of purified monoclonal anti-H-2Kd/anti-H-2Ld (BD) antibodies and aCD20 were used for a standard curve for alloantibody and aCD20 concentrations, respectively.
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5

Mouse and Human T Cell Activation

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The following antibodies were from eBioscience: purified anti-mouse CD3 (no azide and low endotoxin; 145-2C11), purified anti-mouse CD28 (no azide and low endotoxin; 37.51), purified anti-human CD3 (OKT3), purified anti-human CD28 (CD28.2), and following fluorochrome-conjugated anti-mouse antibodies; anti-CD4 (RM4-5), anti-TCR-β (H57-597), anti-Foxp3 (FJK-16a), and anti-GATA3 (TWAJ). The following antibodies were from BD Pharmingen: fluorochrome-conjugated anti-mouse IL-17 (TC11-18H10) and IFN-γ (XMG1.2), purified anti-mouse IL-4 (no azide and low endotoxin; 11B11), purified anti-human IL-4 (no azide and low endotoxin; MP4-25D2), and isotype-matched control antibodies (rat IgG1κ (R3-34), rat IgG2a (R35-95), and rat IgG2b (A95-1)). Fluorochrome-conjugated anti-mouse IL-9 (RM9A4) was purchased from BioLegend. Recombinant mouse IL-4 (404-ML), human IL-4 (204-IL) and TGF-β1 (240-B) were purchased from R&D Systems. Anti-IL-9 antibody (9C1) and isotype control were purchased from BioXCell. 5z-7-Oxozeaenol (TAK1 inhibitor, Sigma) was used at 50 nM, and SB431542 (TGF-βR inhibitor) was used at 5 μM.
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6

Mouse and Human T Cell Activation

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The following antibodies were from eBioscience: purified anti-mouse CD3 (no azide and low endotoxin; 145-2C11), purified anti-mouse CD28 (no azide and low endotoxin; 37.51), purified anti-human CD3 (OKT3), purified anti-human CD28 (CD28.2), and following fluorochrome-conjugated anti-mouse antibodies; anti-CD4 (RM4-5), anti-TCR-β (H57-597), anti-Foxp3 (FJK-16a), and anti-GATA3 (TWAJ). The following antibodies were from BD Pharmingen: fluorochrome-conjugated anti-mouse IL-17 (TC11-18H10) and IFN-γ (XMG1.2), purified anti-mouse IL-4 (no azide and low endotoxin; 11B11), purified anti-human IL-4 (no azide and low endotoxin; MP4-25D2), and isotype-matched control antibodies (rat IgG1κ (R3-34), rat IgG2a (R35-95), and rat IgG2b (A95-1)). Fluorochrome-conjugated anti-mouse IL-9 (RM9A4) was purchased from BioLegend. Recombinant mouse IL-4 (404-ML), human IL-4 (204-IL) and TGF-β1 (240-B) were purchased from R&D Systems. Anti-IL-9 antibody (9C1) and isotype control were purchased from BioXCell. 5z-7-Oxozeaenol (TAK1 inhibitor, Sigma) was used at 50 nM, and SB431542 (TGF-βR inhibitor) was used at 5 μM.
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7

Macrophage Quantification in Aortic Atherosclerosis

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Immunohistochemistry for macrophages was performed on frozen serial sections (adjacent to those stained with Oil Red O) of the ascending aorta using the MicroProbe system as described previously using rat anti-mouse CD68 (Bio-Rad, Cat# MCA1957), Rat IgG2b (BD PharMingen, Cat# 559478), and biotinylated rabbit anti-rat IgG (Vector, Cat# BA-4001) antibodies59 (link). Immunoreactivity was visualized with red chromogen 3-amino-9-ethylcarbazole (AEC) (Vector). Macrophage content was quantified in the first serial section of the aortic root from the internal elastic lamina to the luminal edge using Image-Pro 7.0 software by 2 researchers as described above. The area of CD68 staining was expressed as a percentage of atherosclerotic lesion area.
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8

Comprehensive Immune Cell Profiling

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Bronchoalveolar lavage fluid cells were collected (from 4–6 mice per group) and the pooled cells were FcγR blocked using 2.4G2 antibody (ATCC) and stained with combinations of the following mouse conjugated mAb: allophycocyanin (APC) or FITC anti-CD3, APC/Cy7 anti-CD4, PE anti-CD8a, APC/Cy7 anti-Ly-6G/Ly6C (Gr-1), PE, FITC or Brilliant Violet 421 anti-CD11b, APC or PE anti-F4/80 (all purchased from BioLegend, San Diego, CA, United States). In addition, PE anti-Siglec-F (BD Biosciences) was used to stain eosinophils. Flow cytometric acquisition was performed on a FACSAria II (BD Biosciences) by 4-color analysis using FACSDiVa software and FlowJo, with a minimum of 50,000 live, single-cell events per sample collected. Cells were live gated based on Forward versus Side Scatter properties. In addition, isotype controls were used to control for non-specific background antibody binding. To this end, cells were stained using conjugated (APC, FITC, PE, APC/Cy7, or Brilliant Violet 421) control rat IgG2a, rat IgG2b, and hamster IgG1 antibody (obtained from Becton Dickinson).
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9

Neutralization of Respiratory Syncytial Virus

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For neutralization experiments, rgRSV was incubated with increasing concentrations of heparan sulfate (Sigma-Aldrich, St. Louis, MO), protein A-purified mAb L9 [35 (link)] or mAb 131-2g [36 (link)] (gift from Dr. L.J. Anderson, Emory University School of Medicine, Atlanta, GA), compared to the appropriate mouse isotype controls, IgG2a or IgG1 (R&D Systems, Minneapolis, MN). RSV isolate 2–20 or B1 were incubated with 5 μg/ml mAb 131-2g. All mAbs were diluted in DMEM 10% FBS and incubated with virus for 30 min at room temperature prior to inoculation of HeLa and HAE cultures. For anti-CX3CR1 blockade experiments, cells were incubated with 25 μg/ml CX3CR1 specific rat mAb (clone 2A9-1) (MBL International Corporation, Woburn, MA) or rat IgG2b (Becton Dickinson, East Rutherford, NJ) for 30 min prior to inoculation. HeLa and HAE cultures were inoculated with ~200 PFU at 37°C. The inoculum was removed 2 hr later and cultures rinsed 3 times with PBS. At 24 hr post inoculation, cultures were fixed, permeabilized and incubated with an FITC-labeled anti-RSV polyclonal antibody (Virostat, Portland, ME). Infected (green from GFP or FITC) cells were detected and counted on an EVOS FL Cell Imaging System (Life Technologies, Carlsbad, CA).
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