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6 protocols using nkg2a z199

1

Multiparametric Flow Cytometry Analysis

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PBMCs, either isolated from the peripheral blood or harvested after a 5-day MLC, were analyzed via cell-surface staining using CD3 (SP34), CD4 (L200), CD8 (SK1), CD20 (2H7), CD25 (M-A251) (all BD Pharmingen), CD16 (NKP15, BD Biosciences), and NKG2a (Z199, Beckman Coulter) antibodies. For chimerism analyses, we used an anti–MHC class I HLA mAb (H38, One Lambda, Inc.) that reacts specifically with an MHC class I antigen on donor but not recipient cells. To assess intracellular protein expression of FOXP3, cells were permeabilized using Fixation/Permeabilization solution (eBioscience) and then stained with anti-FOXP3 mAb (PCH101, BD Pharmingen). Cells were analyzed on a FACSverse (BD Biosciences) or Accuri Flow Cytometer (BD Biosciences) using FlowJo software (FLOWJO LLC).
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2

Phenotyping Immune Cells in Simian Immunodeficiency Virus

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Mononuclear cells from spleen of SIV-naïve RM were stained with primary antibody staining which included: CD3 (clone SP34.2; manufacturer BD Pharmingen), CD14 (M5E2; BD Pharmingen), CD20 (2H7; BioLegend), HLA-DR (G46-6; BD Pharmingen), and NKG2A (Z199; Beckman Coulter). After incubation for 20 minutes at room temperature, the cells were washed with wash buffer (1XPBS containing 2% FBS) and stained with DAPI dye (ThermoScientific) for live and dead cell discrimination. After 5 minutes of incubation, cells were washed and fixed with 1% formaldehyde. Samples were recorded using an ImageStreamX Mk II (EMD Millipore) and analyzed using IDEAS Application v6. The general analysis, colocalization and internalization modules in the IDEAS software were utilized in analyzing these samples.
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3

Immobilizing Antibodies for NK Cell Assays

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To immobilize different antibodies in a comparable way to E-plates, we decided to coat the wells first with goat-anti-mouse antibodies. Therefore, E-Plates 16 PET were pre-coated with 50 μl of 5 μg/ml goat-anti-mouse antibody for 3 hours at 37 °C and subsequently washed three times with PBS. In pilot experiments we determined that the subsequent coating with an antibody against NK cell surface receptors gave the strongest signal (Fig. S1). In contrast, binding the antibody first to the NK cells or adding the antibody at the same time as the NK cells without washing was less effective (Fig. S1). Therefore, primary antibody was added to the pre-coated wells at 2 μg/ml in a volume of 50 μl and incubated at 37 °C for 1 hour. Plates were washed three times with PBS and background reading was performed in 100 μl medium.
The following antibodies were used: CD16 (3G8), 2B4 (C1.7), NKp46 (9E2), NKp80 (5D12), CD28 (28.2), DNAM-1 (TX25), CD56 (NCAM) (all from Biolegend), CD3 (OKT3, eBioscience), NKG2D (R&D), NKp30 (p30-15, produced in our laboratory), NKp44 (p44-2, produced in our laboratory), Mouse IgG1 (MOPC-21, Sigma), CD45 (BD Transduction laboratories), NKG2A (Z199, Beckman Coulter), goat anti-mouse (dianova), and CD94 (HP-3D9, BD Bioscience).
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4

Multiparametric Flow Cytometry for Granuloma Characterization

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Granulomas harvested from other Mtb infected NHPs were used in the flow cytometry analysis and processed as previously published (Gideon et al., 2015 (link)). Cells were counted and stained for viability using fixable viability dye (Zombie NIR, BioLegend) and other surface and intracellular markers using the standard protocols. Surface markers include: CD3 (SP34-2, BD), CD4 (L200, BD), CD8a (RPA-T8, BD), CD8b (2ST8.5H7, BD), TCR γδ (5A6.E9, Invitrogen), CD16 (3G8, BD), NKG2A (Z199, Beckman Coulter) and intracellular markers include: Granzyme B (GB11, BD), Granzyme A (CB9, BD) and Granzyme K (G3H69, BD). Samples were acquired on a Cytek Aurora spectral cytometer (5 laser configuration) and unmixed using SpectroFlo software (Cytek). Final analysis was performed in FlowJo (v10, FlowJo)
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5

Comprehensive Immune Profiling of NK Cells

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NK cells were stained with antibodies recognizing CD56 (NCAM16.2), CD3 (UCHT1), CD16 (3G8), CD38 (HIT2), CD34 (8G12), NKp44 (P44-8.1), KIR3DL1 (HP-3E4), KIR2DL1 (HP-3E4), CD107a (H4A3), TNF-α (6401.1111), and IFN-γ (4S.B3) from BD Biosciences (Franklin Lakes, New Jersey, USA), DNAM-1 (11A8), 2B4 (2–69), NKG2D (1D11), NKp30 (p30-15), NKp46 (9E2), CD62L (DREG-56), CXCR4 (12G5), Lir-1 (GHI/75), TRAIL (RIK-2), and FLAG tag (L5) from BioLegend (San Diego, California, USA), NKG2A (Z199) from Beckman Coulter (Brea, California, USA), NKG2C (134591) from R&D Systems (Minneapolis, Minnesota, USA) along with annexin V (BioLegend), and/or a Live/Dead fixable aqua dead cell stain kit (Thermo Fisher Scientific, Waltham, Massachusetts, USA). Flow cytometry was performed using a LSRFortessa instrument (BD Biosciences), and data were analyzed with FlowJo V.10.1 software (BD Biosciences).
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6

Multiparametric Immune Cell Profiling

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Cells were stained with fluorochrome-conjugated antibodies against the following antigens: CD56 (clone HCD56), CD3 (clone OKT3), CD57 (clone NK-1), CD62L (clone DREG-56), CD16 (clone 3G8), CD158a (HP-MA4), CD158b (DX27), NKB1 (DX9), Perforin (dG9), granzyme B (GB11), DNAM-1 (11A8), NKG2D (1D11), NKp80 (5D12), 2B4 (C1.7), TNF (MAb11), IFN-γ (clone B27) (all from Biolegend), NKG2C (134591), BLIMP1 (646702) (from R&D Systems), NKG2A (Z199) (from Beckman Coulter), ZEB2 (from Novus Biologicals), EOMES (WD1928), PLZF (Mags.21F7), SYK (4D10.1) (from eBiosciences), FcεR1γ (from Millipore), and T-BET (04-46) and NKp30 (p30-15) (from BD Pharmingen). All staining was done in combination with Live/Dead Fixable Dead Cell Stain (Thermo-Fisher). Detection of intracellular Perforin, granzyme B, T-BET, ZEB2, EOMES, BLIMP-1, PLZF, SYK, FcεR1γ, TNF and IFN-γ was performed following fixation and permeabilization (eBioscience) according to the manufacturer’s instructions. Cells were acquired on either an LSRII or Fortessa cytometer (BD Biosciences), and data was analyzed using FlowJo (TreeStar).
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