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5 protocols using cd56 clone hcd56

1

Phenotypic Profiling of Cryopreserved PBMCs

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Cryopreserved PBMCs from acute (n = 8) and HIV-uninfected control subjects (n = 9) were thawed and 0.5x106 cells were stained for viability with a LIVE/DEAD fixable blue or green dead cell stain kit (Life Technologies). For phenotypic characterization of monocytes and DCs, cell surface antigens were stained for 15 min at room temperature with the following mouse anti-human monoclonal antibodies: FITC anti-CD3 (clone UCHT1; Biolegend), CD19 (clone HIB19; Biolegend), CD56 (clone HCD56; Biolegend), CD66b (clone G10F5; BD Bioscience), BV605 anti-CD4 (clone SK3; BD Bioscience), v500 anti-CD45 (clone HI30; BD Bioscience), APC-H7 anti-CD16 (clone 3G8; BD Bioscience), PE-Cy5 anti-CXCR4 (clone 12G5; BD Bioscience), AF700 anti-HLA-DR (clone L243; BD Bioscience), APC anti-CD11c (clone B-ly6; BD Bioscience), PE-Cy7 anti-CD123 (clone 7G3; BD Bioscience), BV421 anti-CCR5 (clone 2D7; BD Bioscience), PerCP-Cy5.5 anti-CD14 (clone M5E2; Biolegend). The cells were fixed with 2% paraformaldehyde before running on a LSR Fortessa flow cytometer (BD Biosciences) within 4 h. Flow data were analyzed with FlowJo (TreeStar).
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2

Viability and Phenotypic Analysis of NK Cells

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Cell viability of fresh and cryopreserved NK cells is assessed by staining with the Zombie NIR dye (dilution 1:1000; Biolegend). Fresh and cryopreserved NK cells are phenotypically characterized as described in refs. 28 (link),29 (link) by staining with directly conjugated mouse anti-human antibodies against CD3 (clone UCHT1; dilution 1:50; Biolegend), CD56 (clone HCD56; dilution 1:50; Biolegend), and CD16 (3G8; dilution 1:50; Biolegend). NK cells are defined as CD3− and CD56+ cells (Supplementary Fig. 7). A minimum of 10,000 cells are analyzed using a BD Canto II flow cytometer (BD Biosciences) and Flowjo Software (FLOWJO, LLC Data analysis software).
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3

Multiparametric Immune Cell Profiling

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Cells were stained with fluorochrome-conjugated antibodies against the following antigens: CD56 (clone HCD56), CD3 (clone OKT3), CD57 (clone NK-1), CD62L (clone DREG-56), CD16 (clone 3G8), CD158a (HP-MA4), CD158b (DX27), NKB1 (DX9), Perforin (dG9), granzyme B (GB11), DNAM-1 (11A8), NKG2D (1D11), NKp80 (5D12), 2B4 (C1.7), TNF (MAb11), IFN-γ (clone B27) (all from Biolegend), NKG2C (134591), BLIMP1 (646702) (from R&D Systems), NKG2A (Z199) (from Beckman Coulter), ZEB2 (from Novus Biologicals), EOMES (WD1928), PLZF (Mags.21F7), SYK (4D10.1) (from eBiosciences), FcεR1γ (from Millipore), and T-BET (04-46) and NKp30 (p30-15) (from BD Pharmingen). All staining was done in combination with Live/Dead Fixable Dead Cell Stain (Thermo-Fisher). Detection of intracellular Perforin, granzyme B, T-BET, ZEB2, EOMES, BLIMP-1, PLZF, SYK, FcεR1γ, TNF and IFN-γ was performed following fixation and permeabilization (eBioscience) according to the manufacturer’s instructions. Cells were acquired on either an LSRII or Fortessa cytometer (BD Biosciences), and data was analyzed using FlowJo (TreeStar).
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4

Phenotyping of Activated Human NK Cells

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Primary human NK cells were treated and stimulated as described and incubated for 5 days. Stimulated cells were washed and resuspended in flow buffer (0.5% fetal bovine serum/PBS) before cell surface staining was performed at 4°C, with fluorophore-conjugated antibodies against the following proteins: CD56 (clone HCD56, Biolegend), CD16 (clone 3G8, Biolegend), NKG2D (clone 1D11, BD Biosciences), CD57 (clone HNK-1, Biolegend), NKG2A (clone 131411, R&D Systems), CD94 (clone DX22, Biolegend), and DNAM1 (clone TX25, Biolegend). Isotype-matched control antibodies conjugated with the appropriate fluorophores were used in parallel (mouse IgG1, κ isotype control, clone MOPC-21, Biolegend; mouse IgM, κ isotype control, clone MM-30, Biolegend; mouse IgG1, κ isotype control, clone MOPC-21, BD Biosciences; mouse IgG2A isotype control, clone 20102, R&D Systems). Staining was performed with appropriate combination of fluorophores. Cell viability was assessed using a Live/Dead stain (Zombie NIR™ Fixable Viability kit, Biolegend). Cells were then washed and resuspended in flow buffer before fixation with 2% paraformaldehyde/0.25% fetal bovine serum/PBS at 4°C. Cells were analyzed by flow cytometry, and data analysis was performed using FlowJo_v10 software (Tree Star). Cell debris was excluded, and cells were gated on live single CD56+ pNK cells.
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5

Ex vivo Expanded AML Cell-NK Cell Co-culture

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Ex vivo expanded primary AML cells of 9 different patients were co-cultured with freshly isolated healthy donor NK cells, at an E:T ratio of 5:1 in an ex vivo long term culture system as described by Krupka and coworkers [29 (link), 54 (link)]. Antibodies were added at a final concentration of 10 nM. After 24 hours, cells were harvested, stained for CD16 (clone B73.1), CD56 (clone HCD 56), CD33 (clone WM53) and in concrete cases CD123 (clone 6H6; all antibodies from Biolegend) and analyzed by flow cytometry with a BD LSR II (Becton Dickinson, Heidelberg, Germany). The percentage of residual CD33 or CD123 positive cells in treated cultures relative to control cultures was used to determine licMAB-mediated cellular cytotoxicity. Patient characteristics are summarized in Supplementary Table S1.
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