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7 protocols using l glutamine solution

1

Huh-7 Cell Line Culture and Treatment

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We selected Huh-7 (well-differentiated human hepatocellular carcinoma cell line) among the human in vitro models of hepatocyte [49 (link)]. We obtained Huh-7 from the JCRB Cell Bank. The Huh-7 cell line was grown without antibiotics in the Dulbecco’s Modified Eagle’s Medium (DMEM; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) supplemented with 10% fetal bovine serum (FBS; Biosera, Kansas City, MO, USA) and 1% L-glutamine solution (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan). The cells were cultured in a humidified incubator with 5% CO2 at 37 °C. PA was dissolved in isopropanol at 37 °C to a concentration of 100 mM according to other studies [50 (link),51 (link)]. The dissolved PA solution was mixed with DMEM containing 1% fetal bovine serum albumin (BSA; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan), and the final concentration at the time of administration was adjusted to 200, 400, 600, and 800 μM in DMEM containing 10% fetal bovine serum. 5-ALA was dissolved in serum-free DMEM to a concentration of 1 mM, and the final concentration at the time of administration was adjusted to 200 μM in DMEM containing 10% fetal bovine serum. The final concentration of BSA was adjusted to 200 μM in D-MEM containing 10% fetal bovine serum. 1% BSA was administered to the normal controls in each group in equal volume with the palmitic acid solution.
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2

Cell Culture Protocol for COM Cell Lines

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In this study, we used cells from the following two COM cell lines: KMEC (primary-tumor site of origin; oral gingiva) and LMEC (metastatic site of origin; lymph node) cell lines. One co-author, Dr. Takayuki Nakagawa of Tokyo University, provided the cells. Cell culture methods and protocols accorded with the published note on these cell lines [34 (link)]. Briefly, cells were cultured using Roswell Park Memorial Institute (RPMI) media-1640 (Gibco), l-glutamine solution (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan), antibiotics (penicillin-streptomycin; Sigma), and 10 % fetal bovine serum (BI, Biological Industries), and maintained at 37 °C in a controlled-humidity environment with 5 % CO2. The cells were then stored in liquid nitrogen with a media supplement (CultureSure®, Fujifilm Wako Pure Chemical Corporation, Osaka, Japan). Cold phosphate-buffered saline (PBS) and 0.25 % trypsin or 0.1 % EDTA were applied during the subculture. Cells were counted using an automated cell counter (LUNA II, Logos, USA).
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3

Uterine Horn Organoid Culture Protocol

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Bilateral uterine horns were isolated from C57BL/6 J mice at approximately 10 weeks of age. The tissues were minced into 2–3 mm pieces, washed several times with cold PBS, and dissociated with 2 U/mL dispase II and 1 mg/mL collagenase P (Roche Diagnostics K.K., Tokyo, Japan) for 30 min at 37 °C. Dissociated cells were subjected to the Matrigel bilayer organoid culture (MBOC) protocol [22 (link)]. Briefly, cells were resuspended in the medium supplemented with L-glutamine solution (Wako, Osaka, Japan), penicillin/streptomycin (Sigma-Aldrich, St. Louis, MO), amphotericin B suspension (Wako), 50 ng/mL EGF (Peprotech, Rocky Hill, NJ), 250 ng/mL R-spondin1 (R&D, Minneapolis, MN), 100 ng/mL Noggin (Peprotech), 10 μM Y27632 (Wako, Osaka, Japan), 1 μM Jagged-1 (AnaSpec, Fremont, CA), and 2.5 μM CHIR-99021 (Cayman Chemical, Ann Arbor, MI), and plated on 65 μL of solidified Matrigel (BD Biosciences, Franklin Lakes, NJ) per well in a 12-well plate. After overnight incubation at 37 °C, floating or dead cells were removed, leaving only viable cells attached onto Matrigel, which were covered with 70 μL of Matrigel and the medium. Passage was conducted every 5–10 days at 1:2 to 1:3 dilution. In each passage, organoids were dissociated using Accutase (Innovative Cell Technologies, San Diego, CA) for 5 min at 37 °C and vigorous pipetting, followed by seeding on Matrigel.
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4

Cultivation and Passage of MCF7 Breast Cancer Cells

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MCF7 human breast cancer cells were from RIKEN Cell Bank (Ibaraki, Japan). Cells were cultivated routinely in Dulbecco’s Modified Eagle’s Medium (DMEM, Gibco, Thermo Fisher Scientific Inc., Waltham, MA, USA) supplemented with 10% (v/v) heat-inactivated fetal bovine serum (FBS, Hyclone, GE Healthcare Life Sciences, Logan, UT, USA), 100 μg/ml of streptomycin sulfate, 70 μg/ml of benzylpenicillin potassium, 3 mg/ml of sodium hydrogen carbonate and 0.5 M L-glutamine solution in a humidified chamber (5% CO2, 37°C) (Wako Pure Chemical Industries, Ltd., Osaka, Japan). Cells were grown for five days to 80% confluence and then trypsinated using a 10% dilution of 0.5% trypsin-EDTA mixture in phosphate buffer saline (PBS) without magnesium and calcium.
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5

STED Imaging of HMRef-Stained COS-7 Cells

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COS-7 cells were cultured on glass-bottomed dishes (D11531H, Matsunami Glass) at 37°C in 5% CO2 in DMEM (045-30285, Wako) with 10% FBS (172012, Sigma-Aldrich), 2% l-glutamine solution (073-05391, Wako), 1% sodium pyruvate solution (190-14881, Wako), and 1% penicillin-streptomycin mixed solution (26253-84, Nacalai) (12 (link), 13 (link)). The cells were gently washed twice with Hepes-buffered saline (HBS) (pH 7.4) (25 mM Hepes, 115 mM NaCl, 2.5 mM KCl, 2.0 mM CaCl2, 1.0 mM MgCl2, and 25 mM glucose) and incubated at ambient temperature for 30 min in the dark in HBS containing 1 μM HMRef. Imaging was performed on a TCS SP8 STED 3X microscope (Leica) including a pulsed white light laser for excitation, a 592-nm depletion laser for STED, and a HyD detector. HMRef-stained cells were observed with a 100× oil immersion objective (HC PL APO CS2 100×/1.40 oil) in a field of view of 8192 by 8192 pixels with a pixel size of 10 nm by 10 nm. The excitation and emission wavelengths were 488 and 500 to 570 nm, respectively.
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6

Quantification of c-Kit Expression

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Anti-c-Kit polyclonal antibody (goat IgG) cross reacted with human and mouse c-Kit was purchased from R&D Systems, Inc. (Minnesota, USA). Nonspecific antibody (goat IgG) was purchased from Abcam plc (Cambridge, UK). RPMI-1640 medium, Dulbecco's modified Eagle's medium (DMEM), and bovine serum albumin (A7888; BSA) were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Fetal bovine serum was purchased from Hyclone Laboratories (South Logan, UT, USA). L-Glutamine solution (200 mmol/L) was purchased from Fujifilm Wako Pure Chemical Corporation (Osaka, Japan). Penicillin and streptomycin sulfate were purchased from Life Technologies Corporation (Grand Island, NY, USA). Gelatin (fine powder), Dulbecco's phosphate-buffered saline without calcium and magnesium (PBS) and all other chemicals of analytical grade were purchased from Nacalai Tesque (Kyoto, Japan).
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7

Mitochondrial Biosynthesis Protocol

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Peptides were synthesized by the Research Resources Center of RIKEN Brain Science Institute. Details of the amino acid sequences and molecular weights are provided in Table S1. Plasmid DNA encoding RLuc or GFP genes expressed under the control of the mitochondrial-specific cyclooxygenase-2 (COX-2) promoter (pDONR-cox2:rluc and pDONR-cox2:gfp, respectively) were constructed as previously described. (40) (link) The phMGFP plasmid for intracellular expression of GFP gene was obtained from Promega (Madison, WI). Dulbecco’s modified Eagle’s medium (DMEM), MEM nonessential amino acids solution, and l-glutamine solution were purchased from Wako Chemical (Osaka, Japan). Fetal bovine serum (FBS), penicillinâ€"streptomycin solution, and MitoTracker Red CMXRos were purchased from Invitrogen (Carlsbad, CA). DAPI was purchased from Lonza (Basel, Switzerland).
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