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53 protocols using cf400 cu

1

Purification of K. lactis COMA Complex

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For electron microscopy (Appendix Fig S2D), our final purification step for Klactis COMA was with SEC with a buffer of 25 mM HEPES pH 7.5, 200 mM NaCl and 0.5 mM TCEP. We stored purified protein samples on ice for ca. 16–24 h after the final purification step, before transferring them, at a concentration of ~70 nM, onto carbon‐coated copper‐mesh grids (CF‐400‐Cu, Electron Microscopy Science). We stained COMA samples with uranyl formate. We imaged with a T12 (FEI Tecnai) transmission electron microscope, usually at 80 kV accelerating voltage.
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2

Negative Staining of FAM20A/20C Complexes

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FAM20A/20C complexes were mixed with or without ATP and further purified using size exclusion chromatography. After determining the concentration of peak fractions, we diluted the sample in gel filtration buffer to 40 nM and incubated on continuous carbon grids (Electron Microscopy Sciences, Hatfield, PA; CF400-Cu) for 30 s. After incubation, the grid was transferred directly onto 5 × 75 µl droplets of 2% uranyl acetate and then blotted dry.
Negative stain grids were imaged on an Tecnai Sphera (FEI Company, Hillsboro, OR) at 200 kV using a US4000 CCD detector (Gatan Inc., Pleaston, CA) with the Leginon automated data collection software (Suloway et al., 2005 (link)) over a defocus range of 1–2.5 µm and a dose of 40 e-/Å2 at a nominal magnification of 62,000X (1.90 Å/pix). 93 micrographs were collected from the –ATP grid and 88 micrographs were collected from the +ATP grid, representative micrographs are shown in Figure 2—figure supplement 2.
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3

Negative Stain Visualization of Purified Proteins

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Purified protein was negatively stained with 2% uranyl acetate (UAc), followed by 0.1M lead citrate counterstain, on carbon film copper grids (CF400-Cu, Electron Microscopy Sciences). Samples were then observed and imaged at 100 kV under a Zeiss 912AB transmission electron microscope (TEM) equipped with an Omega energy filter, as published (Feierbach et al., 2007 (link)). Digital images (Advanced Microscopy Techniques) display a 12,500-fold magnification.
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4

Transmission Electron Microscopy of Influenza A Virus

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Purified IAV samples were pH-adjusted and neutralized using 10 × pH buffers as described above. All samples were pH exposed for 30 s at ambient room temperature prior to neutralization. Neutralized samples were then diluted to 1010 PFU/mL equivalent in 1 × pH 7.0 buffer and fixed with 0.06% paraformaldehyde for 4 d at 4°C prior to use in TEM. Five microliters of each fixed sample was deposited onto carbon-coated copper grids (Electron Microscopy Sciences, CF400-Cu). Grids were UV-glow discharged immediately prior to sample addition, and the sample was left to adsorb for 2 min at room temperature. Excess solution was blotted using Whatman filter paper, and grids were washed in a droplet of miliQ water. Samples were then negatively stained for 1 min with 5 µL of 2% uranyl acetate (Electron Microscopy Sciences, 541–09-3). Excess stain was blotted, and grids were allowed to air dry for 5 min. Grids were imaged using the Tecnai Spirit TEM (spot size: 2, emission: 4.41 uA, and accelerating voltage: 80 kV).
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5

TEM Analysis of Extracellular Vesicles

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The EV separated from CTE and control brain tissue were analyzed by TEM. The EV sample (5µl) was adsorbed for 1 min to a carbon-coated mesh grid (# CF400-CU, Electron Microscopy Sciences) that had been made hydrophilic by a 20-s exposure to a glow discharge (25 mA). Excess liquid was removed with a filter paper (#1 Whatman). The grid was then floated briefly on a drop of water (to wash away phosphate or salt), blotted on a filter paper, and then stained with 0.75% uranyl formate (# 22451 Electron Microscopy Sciences) for 30 s. After removing the excess uranyl formate, the grids were examined, and random fields were photographed using a JEOL 1200EX TEM with an AMT 2k CCD camera.
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6

Graphene Oxide Characterization by TEM

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A 20 μL aliquot of sample (200 μg/mL)
was placed on
a carbon-coated copper grid (CF400-Cu) (Electron Microscopy Services,
UK) and left to adsorb for 2 min. Filter paper (Merk-Millipore, UK)
was used to gently remove the excess dispersed material. Then samples
were observed with a FEI Tecnai 12 BioTWIN microscope (FEI, NL) at
an acceleration voltage of 100 kV. Images were taken with a Gatan
Orius SC1000 CCD camera (Gatan, UK). For SAED of GO sheets, material
samples was prepared as described above, however, on Quantifoil S
7/2 copper grids (Electron Microscopy Services, USA). SAED patterns
were acquired on a FEI Talos 200X (FEI, Eindhoven, NL), operating
at 80 kV and using electron dose rates ranging between 45 and 84 e·A–1 s1.
This microscope was equipped with a FEI Ceta CMOS camera. Patterns
were acquired from 0.5 μm2 areas, corresponding to
the 40 μm selected-area aperture. An acquisition time of 1 s
was used.
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7

Morphological Analysis of Nanoparticle Samples

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Morphology of freshly prepared original samples and redispersed samples was observed under a transmission electron microscope (TEM). Firstly, diluted samples were loaded onto a plasma-cleaned carbon TEM grid (CF400-CU, Electron Microscopy Science, Hatfield, PA, USA) and stained with 0.5% uranyl acetate stain solution. Then, the morphology was captured by a TEM (FEI, Tecnai 12 G2, Spirit, BioTWIN, Eindhoven, Netherlands) equipped with a CCD camera (AMT 2k XR40). For the spray-dried powder samples, the morphology was observed by a scanning electron microscope (SEM, JSM-6330F, JEOL Ltd., Tokyo, Japan), by mounting the powder on a double-adhesive carbon tape pre-affixed on a specimen stub.
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8

Characterization of Electrospun Nanofibers

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The scanning electron microscope (SEM, JSM-7600TFE, FEG-SEM, Calgary, AB, Canada) at an operational voltage of 2 kV was used to study the morphology of electrospun fibers. Fiber diameters were calculated using Image-Pro Plus® software by taking an average of about 300 fibers. To confirm the presence of graphene sheets in the nanofibers of PANI/PMMA/Am-rGO, transmission electron microscopy (TEM, JEOL, JEM 2100F, JEOL, Pleasanton, CA, USA) was used. For TEM observation, fibers were directly deposited onto a TEM copper grid with supporting carbon film (CF400-Cu, Electron Microscopy Sciences). Thermogravimetric analysis (TGA) was conducted under nitrogen atmosphere using Q5000 TGA (TA Instruments, New Castle, DE, USA) in the temperature range of 20–900 °C, with a heating ramp of 10 °C·min−1.
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9

Liposome Characterization by Transmission Electron Microscopy

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The electron microscopy of the liposomes was carried out on a FEI Tecnai G2 spirit transmission electron microscope. Sample (2.0 μL) was loaded to a glow-discharged carbon-coated copper grid (CF-400-Cu, Electron Microscopy Science, Hatfield, PA, USA). After 30 s incubation, the grid was blotted with a piece of Whatman No. 4 filter paper (Sigma-Aldrich, Co., St Louis, MO, USA) to remove excessive solution, then incubated with ammonium molybdate (6.0 %) (Sigma-Aldrich, Co., St Louis, MO, USA) adjusted pH with KOH to 6.4 for 30 s. After removing excessive staining solution, the stained grid was dried in air and then observed under FEI Tecnai G2 spirit transmission electron microscope (Hillsboro, OR, USA). Images were taken with a Gatan 2Kx2K multiport readout post column CCD (Pleasanton, CA, USA) at −2 to −3 μm defocus.
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10

Characterization of pH-MUC1-Pt Nanoparticles

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The pH-MUC1-Pt NPs’ size and zeta potential were analyzed by dynamic light scattering (DLS) and ZetaPals (Brookhaven Instrument Corporation). The concentrated NPs solution was diluted in distilled water to obtain a concentration of 0.500 mg PLGA/mL. The obtained solution was measured for the hydrodynamic mean diameter and size distribution. Each measurement was performed in triplicate. The shape, surface morphology, and size of the NPs were analyzed by TEM. The NP samples were mixed with the acetate buffer (0.125 M CH3COONH4, 0.6 mM (NH4)2CO3 and 0.26 mM tetrasodium EDTA at pH 7.4). A total of 10 μL of the sample was negatively stained with 10 μL of 2% (w/v) phosphotungstic acid. A droplet of the NPs was placed on a carbon-coated copper grid (Electron Microscopy Sciences, CF400-Cu, carbon film, 400 mesh), forming a thin liquid film.
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