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9 protocols using phospho histone h2ax antibody

1

Quantifying DNA Damage by γH2AX Foci

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Cells were collected and fixed with fixation buffer (eBioscience) for 30 min at 4°C. Then, cells were washed with permeabilization buffer (eBioscience), and incubated overnight with phospho‐histone H2A.X antibody (Ser139; Cell Signaling #2577). Cells were washed twice and incubated with secondary antibodies (Jackson ImmunoResearch), followed by two additional washings and staining with DAPI for 10 min. Cells were imaged by ImageStreamX mark II (Amnis‐EMD Millipore) and γH2AX foci were quantified using IDEAS 6.1 software (Amnis). Normalized frequency was defined as the frequency cells with the indicated amount of γH2AX spots out of the total number of cells.
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2

Immunofluorescence Staining of Phospho-H2AX

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Tissue sectioms (5 μM thick) were deparaffinized and hydrated before the antigen retrieval step. Heat-induced antigen retrieval was performed at pH 6 for 20 min. The tissues were incubated with blocking buffer (4% BSA in 0.1% Tween-20+PBS) for 30 min. Sections were incubated with phospho-histone H2AX antibody (1:500, Cell Signaling, cat.#9718) in blocking buffer overnight at 4˚C. Following washes with PBST, tissue sections were incubated with Alexaflour 568 conjugated goat anti-rabbit (1:500, Invitrogen, A11011) in blocking buffer at room temperature for 1 hr. Sections were washed and mounted with Vectashield mounting medium with DAPI (Vector Laboratories) and images were taken with fluorescence microscope by using 40X objective.
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3

Immunofluorescence Staining for Phospho-histone H2A.X

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Immunofluorescent staining was performed as described previously (27 (link)). Briefly, cells were fixed with 4% paraformaldehyde for 15 min at room temperature in a multi-well plate. The plate was incubated with blocking buffer (1X PBS, 5% normal serum, and 0.3% Triton™ X-100) for 1 hour and then incubated overnight with phospho-histone H2A.X antibody (Cell Signaling Technology, catalog # 80312) in antibody dilution buffer (1X PBS,1% BSA and 0.3% Triton™ X-100) at 4°C. After being washed three times with PBS, the cells were incubated with a secondary Alexa Fluor™ 488-conjugated antibody. The nuclei were labeled with DAPI (Sigma, catalog # D9542).
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4

Quantitative Telomere Dysfunction Analysis

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Deparaffinized tissue sections (5 μM) were incubated in sodium citrate buffer (10 mM Na-citrate, 0.05 % Tween 20, pH=6.0) at microwave for 20 min to retrieve antigens. Then tissue sections were rinsed with PBS and dehydrated in 95% ethanol. Denaturation was conducted with hybridization buffer (as in TIF assay) containing FITC-conjugated telomere sequence (TTAGGG)3-specific PNA probe for 7 min at 80˚C on a heat block. Slides were washed sequentially with 70% formamide / 0.6 × SSC, 2 × SSC, PBS, 0.1% PBST and incubated with blocking buffer (4 % BSA in PBST) for 30 min. Sections were incubated with phospho-histone H2AX antibody (Cell Signaling) in blocking buffer at RT for 1 h and washed with PBST and incubated with Alexaflour 568 conjugated goat anti-Rabbit antibody in blocking buffer at RT for 1 h. Sections were washed sequentially with 0.1% PBST and PBS. The slides were mounted with Vectashield mounting medium with DAPI. Images were captured with a fluorescence microscope using a 100X objective. TIFs were quantified using Image J.
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5

Quantifying DNA Damage via H2AX Assay

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One day post irradiation (4, 8, 12, 16 Gy), cells were fixed with 4% paraformaldehyde for 10 min. Then, 0.2% Triton X-100 solution was used to permeate the cell membrane. Next, the blocking reagent was utilized to block the cells for 1 h. Cells were treated with Phospho-Histone H2AX antibody (Ser139, Cell Signaling Technology, USA) for 24 h at 4 °C and treated with fluorescence secondary antibody (Alexa Fluor 488-labeled Goat Anti-Rabbit IgG, Cell Signaling Technology, USA) for another 1 h. Finally, fluorescent images of the cells were captured by fluorescence microscopy.
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6

Quantifying DNA Damage with Microscopy

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Cells were fixed with 3.7% formaldehyde, permeabilized with 0.1% Triton-X100, blocked with 0.1% BSA and incubated for 1 hour at room temperature with phospho-histone H2A.X antibody (9718, Cell Signaling Technology) followed by Alexa488 or Alexa647-labelled secondary antibody and DAPI as counterstain. Imaging was performed with a Leica TCS SP8 laser scanning confocal microscope (Boulder Grove Il).
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7

Quantifying DNA Damage by γH2AX Immunofluorescence

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DNA damage was assessed using an immunofluorescence staining protocol to detect γH2AX, an early marker of DNA damage. For this, 15,000 cells were seeded in each well of an eight-well glass slide chamber 24 h prior to the study. 24 h later, the cells were incubated with either cell culture medium (0 mg/mL control) or treated, in triplicate, with NPs at a concentration of 0.25, 0.5, or 1 mg of Ag per mL for 4 h. The cells were fixed with 4% paraformaldehyde, blocked, and incubated at 4 °C overnight with Phospho-Histone H2AX antibody (Cell Signaling, Danvers, MA). As positive controls, the cells were irradiated with a dose of 6 Gy delivered by a Precision X-Rad 320IX Biological X-Ray Irradiator 30 min prior to fixation. After washing with PBS, the cells were incubated with an anti-rabbit AF 594 secondary antibody for 1 h. Following mounting with Vectashield antifade mounting media containing DAPI, the slides were imaged at 20× using a Zeiss AxioObserver Z1 equipped with DAPI and RFP filters. ImageJ was used to analyze the fluorescence intensity of the RFP and DAPI images. The mean intensity ratio was determined by calculating the ratio of RFP and DAPI fluorescence intensities. Data are presented as the mean ratio of fluorescence intensity from control ± standard deviation.
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8

Western Blot Analysis of Cellular Proteins

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Total proteins of the cells were harvested with RIPA buffer and separated via SDS/PAGE. Subsequently, the proteins were transferred to a poly(vinylidene difluoride) membrane and blocked by 5% slim milk in TBS plus 0.1% Tween 20. The membrane was then blot with β‐actin antibody (dilution 1:1000; SC47778; Santa Cruz Biotechnology, Santa Cruz, CA, USA), Phospho‐Histone H2A.X antibody (dilution 1:1000; catalogue no. 2577; Cell Signaling Technology, Danvers, MA, USA) or p21/Waf1/Cip1 antibody (dilution 1:1000; catalogue no. 2947; Cell Signaling Technology), respectively, overnight at 4 °C. The membrane was washed with TBS plus 0.1% Tween‐20 solution and then blotted with proper horseradish peroxidase‐conjugated secondary antibodies. After washing, chemdoc (Bio‐Rad, Hercules, CA, USA) was used to detect the signals.
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9

Survivin and Histone H2A.X Protein Analysis

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For total protein analysis, cells were resuspended in a lysis buffer. Aliquots of protein extracts were separated on 15% SDS-PAGE and electroblotted onto 0.45 mm Hybond ECL nitrocellulose membranes (Amersham Biosciences, Little Chalfont, UK). The membranes were incubated with the survivin antibody (sc-10811; Santa Cruz Biotechnology, Santa Cruz, CA) or with the Phospho-Histone H2A.X antibody (#9718; Cell Signaling Technology, Danvers, MA). Blots were developed using horseradish peroxidase-conjugated secondary antibodies (Dako, Vienna, Austria) and the SuperSignal 1 West Pico Chemoluminescent Substrate (Thermo Scientific, Rockford, IL), in accordance with the manufacturers' protocol.
Cell Proliferation Assay 1 Â 10 4 MUG-Chor1 or U-CH1 cells were seeded overnight in 96-well microtiter plates (Brand, Voerde-Friedrichsfeld, Germany) and incubated with 0-5 mM Sepantronium bromide (YM155; Selleckchem, Houston, TX) for 24 and 48 h. The CellTiter96 1 AQ ueous Assay (Promega) was performed according to the manufacturer's instructions.
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