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Activx desthiobiotin fp serine hydrolase probe

Manufactured by Thermo Fisher Scientific

The ActivX Desthiobiotin-FP Serine Hydrolase Probe is a chemical probe designed for the detection and enrichment of serine hydrolase enzymes. It contains a desthiobiotin group for affinity purification and a fluorophosphonate (FP) warhead that covalently binds to the active site of serine hydrolases. This probe can be used to profile the activity of serine hydrolases in complex biological samples.

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2 protocols using activx desthiobiotin fp serine hydrolase probe

1

Western Blot Analysis of Pancreatic ER Fractions

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Pancreatic ER fractions as well as total tissue lysates were examined by Western blot as follows: ER fractions (10–20 μg) were separated on Invitrogen Tris-glycine sodium dodecyl sulfate–polyacrylamide gel electrophoresis 4%–20% gradient gels, transferred to nitrocellulose membranes using Bio-Rad (Hercules, CA) TransBlot Turbo rapid transfer system (15 minutes at a constant current of 1.25 A per minigel), and blocked with 5% bovine serum albumin in Tris-buffered saline buffer with 0.075% Tween 20. Subsequent incubations and washes were performed in Tris-buffered saline with 0.075% Tween 20. Primary antibodies used against lipase, carboxyl ester lipase (Cel) (sc-34878), signal recognition particle 72 were from Santa Cruz Biotechnologies (Santa Cruz, CA). Extracellular signal-regulated kinase 1/2 antibody was from Cellular Signaling Technologies (Beverly, MA). ActivX Desthiobiotin-FP Serine Hydrolase Probe and streptavidin–horseradish peroxidase were from Thermo Fisher Scientific. ER fractions (50 μg) were incubated with probe (2 μg/mL) in 10 mmol/L Tris-HCl, pH 7.4 for 20 minutes at room temperature, then Triton X-100 (Bio-Rad) was added to 1% and the clarified mixture was incubated for a further 20 minutes at room temperature. Samples then were prepared by addition of gel loading buffer and further processed for Western blot as described earlier.
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2

Affinity Enrichment of Serine Hydrolases

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Pull-down of serine hydrolases 100 ml of protein extract (in 67 mM Tris-HCl, pH 7.5 buffer including 10 mM DTT) from 24 h imbibed, non-aged, Arabidopsis seeds was first incubated with 50 ml streptavidin sepharose beads (GE Healthcare) for 1 h with constant mixing on a rotator at room temperature in order to remove the excess of biotinylated background proteins. After incubation, samples were centrifuged for 3 min at 1000×g and the supernatant was collected in a clean tube, after which 1 volume of freshly prepared 10 M urea dissolved in extraction buffer was added. This mixture was then labelled with 2 mM ActivX™ Desthiobiotin-FP Serine Hydrolase Probe (ThermoFisher) for 2 h. An identical NPC was prepared following these instructions, but replacing the volume of probe with DMSO. After incubation, 50 ml of streptavidin sepharose beads was added and samples were incubated for 1 h with constant mixing on a rotator. After incubation, samples were centrifuged for 3 min at 1000×g and the supernatant was collected in a clean tube. To test if the affinity enrichment worked, a part of the proteins were eluted by boiling in 2× SDS-PAGE loading buffer (5 min at 95°C). The rest of the beads were used for sample preparation for LC/MS/MS (on-bead digestion, OBD).
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