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6 protocols using nci h23

1

Cell Lines, Transfection, and Viability Assay

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Human embryonic kidney 293T (HEK293T), Calu-3, and human NSCLC cell lines NCI-H23, NCI-H1703, NCI-H1793, NCI-H2009, NCI-H358, NCI-H460, NCI-H1299, NCI-H1437, HCC15, HCC827, and HCC2279 were purchased from Korean Cell Line Bank (Seoul, Korea) or KRIBB Cell Line Bank (Daejeon, Korea). Calu-3 and HEK293T cells were cultured in Dulbecco’s modified Eagle’s medium and all NSCLC cell lines in RPMI-1640 supplemented with 10% fetal bovine serum and penicillin/streptomycin (Invitrogen, Carlsbad, CA, USA). Cells were transfected with the indicated plasmids using TurboFect (Thermo Scientific, Rockford, IL, USA) according to the manufacturer’s instructions and siRNAs (20–40 nM) by electroporation (Neon, Invitrogen) according to the manufacturer’s instructions. Cell viability was determined using the sulforhodamine B (SRB) assay, as previously described57 (link).
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2

Cancer Cell Lines and Reagents

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Lung (NCI-H23, A549, NCI-H358, Calu-1, NCI-H460, and NCI-H1299), breast (SK-BR-3, MCF-7, and MDA-MB-231), colorectal (HCT116), hepatocellular (SK-HEP-1), and cervical (HeLa) cancer cells were obtained from the Korean Cell Line Bank (Seoul, Korea). Melanoma cell lines (A375 and A2058) were obtained from the American Type Culture Collection (Manassas, VA, USA). Cells were cultured in 10% fetal bovine serum (FBS) as well as penicillin/streptomycin-contained Dulbecco’s modified Eagle’s medium (DMEM) and Roswell Park Memorial Institute (RPMI) 1640 at both 20% O2 and 5% CO2. Cell culture medium, FBS, and antibiotics were purchased from HyClone Thermo Scientific (Waltham, MA, USA). Simvastatin (S6196), Lovastatin (438185), Lonafarnib (SML1457), and GGTI-2133 (G5294) were purchased from Sigma Aldrich (St. Louis, MO, USA). Atorvastatin (S5715), Fluvastatin (S2061), and MK-2206 (S1078) were obtained from Selleckchem (Houston, TX, USA). All chemicals stock solution was dissolved in dimethyl sulfoxide (DMSO).
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3

Comprehensive Cell Line Characterization

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HUVEC-C, 143B, A-549, HeLa, U2OS, and 4T1 cell lines were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). Caki-1, DU145, HT-29, HCT 116, MCF-7, NCI-H23, NCI-H522, NCI-H460, PC-3, SK-MEL-2, SK-MEL-5, SK-MEL-28, U-87MG, CT-26, and RenCa were obtained from the Korean Cell Line Bank (KCLB, Seoul, Korea). The cells were maintained with ATCC and KCLB recommended media, respectively, and supplemented with 10% fetal bovine serum (FBS). The Wyeth-calf adapted strain VACV (VR-1536, New York City Department of Health Laboratories) was purchased from the ATCC, amplified in HeLa cells, and quantified while using a VACV titration protocol [40 (link)]. In this study, all of the incubation and infection steps were performed at 37 °C in 5% CO2, and all chemicals were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany), unless otherwise specified.
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4

Cell Culture and Reagent Conditions

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MDA-MB-231 cells were purchased from the American Type Culture Collection (Rockville, MD). NCI-H23, A-498, SNU-423, HeLa, COLO 205, and Calu-3 cells were purchased from the Korean Cell Line Bank (Seoul, Korea). HEK293A cells were purchased from Invitrogen (Carlsbad, CA). MDA-MB-231, NCI-H23, A-498, SNU-423, and COLO 205 cells were cultured in RPMI 1640 supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 μg/mL streptomycin at 37 °C in 5% CO2. HeLa cells were grown in modified Eagle’s medium (MEM; HyClone, Logan, UT) supplemented with 10% FBS, penicillin, and streptomycin. HEK293A and Calu-3 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; HyClone) supplemented with 10% FBS, penicillin, and streptomycin. CXCL12 (#300-28A) was purchased from PeproTech (London, UK). Histamine (#H7250) was purchased from Sigma‒Aldrich (St. Louis, MO). AMD3100 (#HY10046), U73122 (#HY-13419), and U0126 (#HY-12031) were purchased from MedChemExpress (Monmouth Junction, NJ). Pyrilamine (#0660) and PTX (#3097) were purchased from Tocris Bioscience (Ellisville, MO). YM254890 (#AG-CN2-0509-MC05) was purchased from AdipoGen Life Sciences (San Diego, CA).
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5

Cell lines and gene silencing methods

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Human cervical cancer HeLa cells, as well as non-small cell lung cancer NCI-H23, NCI-H1703, NCI-H358, and Calu-3 cells, were purchased from the Korean Cell Line Bank (Seoul, Korea) or KRIBB Cell Line Bank (Daejeon, Korea). The lung cancer cell lines YL01, YL03, YL05 (EGFR exon19del), and YL08 (EGFR wild-type/ALK mutation-positive), each derived from a different patient, were provided by the Yonsei University College of Medicine, Seoul, Korea. Patient characteristics and treatments were previously described19 (link). Cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) or RPMI-1640 medium supplemented with 10% fetal bovine serum (FBS) and penicillin/streptomycin (Invitrogen, Carlsbad, CA, USA). Cells were transfected with plasmids using Turbofect (Thermo Scientific, Rockford, IL, USA) and with siRNAs (20–40 nM) by electroporation (Neon, Invitrogen) according to the manufacturer’s instructions. The siRNAs used in this study were purchased from Bioneer Corporation (Daejeon, Korea). The target sequences were as follows: siJNK1 #1, 5′-CUGGUAUGAUCCUUCUGAA-3′; siJNK1 #2, 5′-GUCACACCUGGAAACCUGA-3′; and siScrambled, 5′-CCUACGCCACCAAUUUCGU-3′.
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6

Lung Cancer Cell Lines and NK-92 Cytotoxicity Assay

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Two human non-small cell lung cancer cell lines, A549 and NCI-H23, were used in this study, and were obtained from the Korean Cell Line Bank (Seoul, Korea). These cell lines were maintained in RPMI media supplemented with 10% fetal bovine serum (FBS) (Gibco, Grand Island, NY), 2 mM L-glutamine, 100 μg/ml streptomycin, and 100 U/ml penicillin. The NK-92 cell line was obtained from the American Type Culture Collection (Rockville, MD, USA) and maintained in alpha-Minimum Essential Modified medium supplemented with 12.5% (v/v) fetal bovine serum, 12.5% (v/v) horse serum, 2 mM L-glutamine,0.1 mM 2-mercaptoethanol, 200 U/mL of recombinant human interleukin-2, 100 μg/mL streptomycin, and 100U/mL penicillin. All cells were cultured at 37°C in a humidified atmosphere containing 5% CO2.Three HDAC inhibitors, apicidin, suberoylanilide hydroxamic acid (SAHA; vorinostat) and tricostatin A (TSA), two ATM-ATR inhibitors, caffeine, and KU-55933, cycloheximide (CHX) were purchased from Sigma-Aldrich (St. Louis, MO, USA). To irradiate cancer cells, we used a ClinaciX Linear Accelerator (Varian Medical Systems, Inc. Palo Alto, CA, USA) with the assistance of Dr. Jiho Nam (Pusan National University Yangsan Hospital).
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