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Rna isolation kit

Manufactured by Promega
Sourced in United States, China

The RNA isolation kit is a laboratory tool designed to extract and purify ribonucleic acid (RNA) from biological samples. It provides a standardized procedure for isolating RNA while minimizing the risk of degradation.

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26 protocols using rna isolation kit

1

Quantitative Expression Analysis of Sclerotia and Aflatoxin Genes

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Mycelia were grown in YES liquid medium for 24 h, before being harvested and grounded into powder using liquid nitrogen. The total RNA was isolated from approximately 100 mg ground mycelia of each strain using an RNA isolation kit (Promega, USA). For qRT-PCR analysis, we used a Revert Aid First-strand cDNA Synthesis kit (Thermo Fisher Scientific, USA) to synthesize the cDNA from the RNA of each strain. We used the SYBR Green Supermix (Takara, Japan) and PikoReal 96 Real-time PCR system (Thermo Fisher Scientific, USA) to complete qRT-PCR analysis (denaturation at 95 °C for 30 S, renaturation and extension at 60 °C for 30 S, 40 cycles), and the relative quantities of each transcript were calculated using the 2−△△CT method (Livak & Schmittgen, 2001 (link)). The transcript levels of qRT-PCR were normalized relative to the transcript level of the β-tubulin housekeeping gene. The qRT-PCR primers are listed in Table S3. The data of qRT-PCR analysis were completed in triplicate, and each experiment was repeated three times. In this study, we analyzed sclerotia production related gene sclR, and the aflatoxin synthesis related genes aflO and aflR to evaluate the acetylation effects on sclerotia production and aflatoxin synthesis respectively.
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2

P. pastoris RNA Expression Analysis

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P. pastoris cells were cultured for 12 to 14 h, and total RNA was isolated using RNA isolation kit (catalog no. Z3100; Promega) as per the manufacturer's instructions. RNA was quantified by measuring the absorbance at 260 nm using NanoDrop 2000 spectrophotometers, and 1 μg of DNase-treated RNA was used for complementary DNA (cDNA) preparation. qPCR was carried out using iQ SYBR Green super mix in a StepOnePlus Real-Time PCR system (Thermo Fisher Scientific). The relative mRNA expression levels were obtained using the ΔΔCt method, wherein the ΔCt value of a sample, which is the Ct value of a gene relative to that of 18S rRNA, is normalized to that of the control.
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3

Quantification of Cordycepin Metabolites in LPS-Stimulated Mouse Macrophages

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RAW 264.7 mouse macrophage cells were cultured in DMEM supplemented with 10% FBS. Prior to experiments, cells were washed with PBS and cells were maintained in DMEM with 0.5% FBS or 10% FBS for 24 h. LPS was added at 1 µg/mL, 1 h before compound treatment, when needed. When the cells were analysed for concentration levels of cordycepin, 3′-deoxyinosine and CordyTP, the cells were washed twice with PBS. The cells were then treated with methanol and mixed vigorously before the mixture was harvested. The mixture was filtered using filter tubes mentioned above and the filtrate was analysed by liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS). For determination of relative mRNA levels, RNA was isolated from the lysates using an RNA isolation kit, following manufacturer’s protocol (Promega, Madison, WI, cat no. Z6012). RNA was reverse transcribed to cDNA using SuperScript™ III reverse transcriptase (Invitrogen, Carlsbad, CA). Quantitative polymerase chain reaction (qPCR), was performed with Qiagen Rotor-Gene Q qPCR machine (Qiagen, Hilden, Germany) using Promega SYBR Green GoTaq® qPCR master mix (Promega). Supplementary Information 1 shows the list of qPCR primers used.
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4

Gene Expression Analysis of Cell-Scaffold Constructs

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Total RNA was isolated from cell/scaffold constructs using the RNA isolation kit (Maxwell®, Promega Corporation, Madison, WI, USA) after 7 and 21 days of culture. Nanodrop spectrophotometer (Thermo Scientific) was used to quantify extracted RNA, and cDNA was synthesised using high-capacity complimentary DNA reverse transcription kit (Applied Biosystem®, Foster, CA, USA) following manufacturer’s instructions. Real-time quantitative polymerase chain reaction (RT-PCR) was done on StepOne plus RT-PCR system, using TaqMan® gene expression assays (Applied Biosystems®, Carlsbad, CA, USA) for glyceraldehyde-3-phosphate dehydrogenase (GAPDH), inflammatory cytokines (interleukins IL-6 and IL-8), collagen type 1 alpha 2 (Col 1α2), osteopontin (SPP1), bone morphogenetic protein-2 (BMP-2), runt-related transcription factor 2 (RUNX2) and alkaline phosphatase (ALP). GAPDH was used as an endogenous control, and comparative Ct method (2-ΔΔCt) was used to analyse the obtained data.
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5

RNA Isolation and qPCR for Gene Expression

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Isolation of RNA from the leaves (same leaves used for protein analysis) was performed using an RNA isolation kit according to the manufacturer’s instructions (Promega, Madison, WI, USA). One μg of DNAase-treated RNA was reverse transcribed using a reverse transcriptase kit (Promega, Madison, WI, USA) to synthesize first-strand cDNA. Quantitative Real-time PCR was performed with a Rotor-Gene Q 2plex HRM Platform (Rotor-Gene Q 2plex HRM Platform), using SYBR green as a reference dye provide by Qiagen qPCR kit (QIAGEN OneStep RT-PCR Kit, Westburg, Netherland) for 5 min at 95°C, followed by 25 cycles consisting of 20 sec at 95°C, 30 sec at 57°C and 30 sec at 72°C, then 10 min at 72°C. All quantifications were normalized to actin. The RT-PCR reactions were performed using three independent RNA preparations from independently grown plants and three replicates for qPCR. The gene specific primers used in this study are as follows: lePT1 (accession number: AF022873.1) F-5’-ATAAAAATGCAAAATAATCC-3’; R-5’-AGCCACCCGAAGAACAACTG-3’; lePT2 (accession number: AF022874.1) F-5’-AGAAAGTGCACAATTTTTTG-3’; R-5’-GGTGTACTACCAAAGGAGAG-3’; leActin (accession no. U60482) F-5’-CTGCCATGTATGTTGCCATC-3’; R-5’-GGCTGTGGTGGTGAAAGAGT-3’.
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6

Quantitative Analysis of Gene Expression

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The leaves, tendrils, flower buds, flowers and fruits were frozen in liquid nitrogen and stored at −80°C prior to RNA extraction. Total RNA was extracted with Huayueyang RNA isolation kit (China), cDNA was synthetized using M-MLV Reverse Transcriptase (Promega). Quantitative RT-PCR was performed using an Applied Biosystems 7500 real-time PCR systems with SYBR Green as fluorescent dyes (TaKaRa). Three biological replicates were performed, upon which three technical replicates were used for the qRT-PCR analysis. 18S rRNA was used as reference control to normalize the expression data [36] (link). The gene specific primers are listed in Table S1.
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7

Molecular Analysis of sup-5 Mutants

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Inflorescence of sup-5, pAtSUP::CsSUP;sup-5, 35S::CsSUP;sup-5 were frozen in liquid nitrogen and stored at −80°C prior to RNA extraction. Total RNA was extracted with Huayueyang RNA isolation kit (China), cDNA was synthetized using M-MLV Reverse Transcriptase (Promega). Actin2 was used as internal control to normalize the expression data. The gene specific primers are listed in Table S1.
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8

Flower Bud RNA Extraction and cDNA Synthesis

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Total RNA was extracted from female flower buds using the Huayueyang RNA isolation kit (China), and 3 µg of samples were used to synthetize cDNA using M-MLV Reverse Transcriptase (Promega). The cDNA samples were amplified by PCR via the following system: 95°C for 5 min; 30 cycles of 95°C for 30 s, 53°C for 30 s, and 72°C for 30 s; then 72°C for 10 min.
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9

Fungal qRT-PCR Methodology for Conidiation and Sclerotia

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The analysis of qRT-PCR was performed following the protocol that was formerly described by Nie et al. (2016) (link) with minor modification. Spores were inoculated with corresponding medium (PDA and YES agar for conidiation, WKM media for sclerotia formation) for 48 h, and the fungal hyphae were collected and ground into powder in liquid nitrogen. Then, total RNA was extracted with RNA isolation kit (Promega, United States). The first strand cDNA was synthesized with Revert Aid First-strand cDNA Synthesis Kit (TransGen Biotech, China) from 3 μg total RNA. The primers for the analysis were listed in Supplementary Table S2. Each experiment was repeated at least five times.
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10

Uric Acid Metabolism Regulation Protocol

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LBPs (≥90%) were purchased from Beijing Solarbio Science & Technology Co., Ltd. (Beijing, China). Potassium oxonate (97%) and allopurinol (≥99%) was purchased from Sigma-Aldrich Co. LLC (Shanghai, China). Uric acid (UA), serum creatinine (SCR), blood urine nitrogen (BUN) and xanthine oxidase activity assay kit were purchased from Abcam Inc. (Cambridge, UK). The RNA isolation kit was obtained from Promega Biotechnology Co., Ltd. (Beijing, China). PrimeScriptTM RT reagent kit with gDNA Eraser and TB Green® Premix Ex Taq™ II (Tli RNaseH Plus) was purchased from Takara Biomedical Technology Co., Ltd. (Dalian, China). Protease and phosphatase inhibitors were purchased from Thermo Fisher Scientific Inc. (Waltham, MA, USA). Anti-OAT1, anti-OAT3 and β-actin antibody were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Anti-GLUT9 was purchased from Abcam Inc. (Cambridge, UK). The Amersham ECL System was purchased from GE Healthcare (Pittsburgh, PA, USA). Other biochemical reagents and chemicals were of analytical grade.
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