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Histoclear

Manufactured by Merck Group
Sourced in United States, United Kingdom

Histoclear is a clearing agent used in the histological processing of tissue samples. It is a transparent, colorless liquid that is miscible with both alcohol and paraffin. Histoclear is primarily used to remove alcohol from tissue samples prior to embedding in paraffin wax, a critical step in the preparation of tissue for microscopic examination.

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23 protocols using histoclear

1

Histological Analysis of Skin Tissue

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For H & E staining, sections of skin were fixed in 4% paraformaldehyde in PBS for 16 h before embedding into paraffin. Thin sections (7 µm ) were cut and processed in an alcohol series (50–100%) for 5 min, stained with H & E for 3 min, and then rinsed in tap water for 3 min, before mounting on glass slides with an embedding media of Histo-Clear (Merck & Co, New Jersey, USA). The sections were examined under the microscope (Carl Zeiss Inc., Microimaging, LLC, Thornwood, New York, USA). Masson’s Trichrome staining was performed for identification of collagen [36] . For immunohistochemical staining, excess tissues were trimmed down and 7 µm thick paraffin sections were used to detect different antigens. Type I collagen deposits were immunodetected according to the described protocol. Tissue sections were incubated overnight with the primary antibodies (1∶50 or 1∶100 dilutions for collagen, and 1∶200 for CD-68) at 4°C, washed three times in PBS, and then incubated with peroxidase-conjugated secondary antibodies (1∶1000 in blocking solution) for 5 min. Sections were counterstained with 4, 6-diamidino-2-phenylindole (DAPI) (Invitrogen, Carlsbad, California, USA) and stored at 4°C. The sections were examined by a Laser Confocal microscope (Olympus Imaging America Inc., Center Valley, Pennsylvania, USA) connected to software (Flow view, FV10.AS), version (2.0 viewer).
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2

Immunofluorescence Staining of Pituitary

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Adult pituitaries were fixed for 16–24 h at room temperature in 10% NBF (Sigma). The samples were dehydrated and stored in 70% ethanol at 4 °C until they embedded. Wax embedding and sectioning were carried out as previously described [49 (link)]. Histological sections of 8 μm were used throughout. Slides were deparaffinized in Histoclear (Merck) and rehydrated through a descending graded ethanol series. Antigen retrieval was performed in citrate retrieval buffer pH 6.0 using a Decloaking Chamber NXGEN (Menarini Diagnostics) at 110 °C for 3 min. For paraffin immunofluorescence, sections were blocked in blocking buffer (0.15% glycine, 2 mg/ml of BSA, and 0.1% Triton-X in PBS) with 10% sheep serum (donkey serum for goat SOX2 antibody) for 1 h at room temperature, followed by incubation with primary antibody diluted in blocking buffer with 1% serum at 4 °C overnight. Slides were washed in PBST (0.1% Tween 20 in PBS) and incubated with appropriate biotinylated secondary antibodies or non-biotinylated secondary antibodies in blocking buffer for 1 h at room temperature. Slides were washed in PBST. Slides with biotinylated secondary antibodies were incubated with fluorophore-conjugated Streptavidin (Life Technologies) for 1 h at room temperature together with Hoechst (Life Technologies). After washing in PBST, slides were mounted with VectaMount (Vector Laboratories).
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3

Quantification of OCT4 and p62 in Tissue Samples

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The tissues processed on a tissue array slide (BC081120f, US Biomax Inc, US Biomax Inc, Rockville, MD, USA) were deparaffinized and rehydrated in HistoClear and serially diluted ethanol (Merck, Darmstadt, Germany). After heat‐induced antigen retrieval, tissues were blocked with normal horse serum for 1 h and incubated overnight at 4 °C with primary antibodies. OCT4 (1 : 400; Abcam) and p62 (1 : 200; Santa Cruz Biotechnology) antibodies were used. Next, nuclei were counterstained with 4′,6‐diamidino‐2‐phenylindole (DAPI, Sigma‐Aldrich) for 15 min and 2 h at room temperature with Alexa Flour® 488‐ and 594‐conjugated secondary antibodies (1 : 1000; Enzo Life Sciences). The slide was mounted with a cover slide using mounting solution (Dako; Agilent Technologies, Santa Clara, CA, USA). Images were obtained with confocal laser scanning microscopy (LSM 700, Zeiss, Oberkochen, Germany) using identical exposure settings. The number of puncta was measured using i‐Solution software (version 22.5, InnerView™, Seongnam, South Korea). The intensity of nuclear OCT4 fluorescence was measured using imagej [18 (link)].
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4

Tissue Preparation for Microscopic Analysis

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Internode samples of about 1 cm in length were vacuum infiltrated and fixed overnight in 4 % (v/v) paraformaldehyde solution in 1 × sodium phosphate buffer (pH 7.4) and dehydrated in a graded ethanol series. Absolute ethanol was substituted by an ethanol:limonen (1:1) solution (Histo-clear II; National Diagnostics) for 1 h and replaced three times by 100 % Histo-clear for 1 h each. The samples were then infiltrated with 50 % paraffin (Histosec, Merck) 50 % Histo-clear solution overnight at 58 °C and spacing in 100 % Histosec for 2 days, replaced twice a day. Embedded tissues were casted with Histosec. Five micrometers thick sections were prepared using a Meditome M530 (Medite) micrometer and collected on poly-l-lysine coated microscope slides. Paraffin removal was accomplished as described by Nic-Can et al. (2013) (link).
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5

Immunohistochemical Visualization of c-Fos Expression

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Free-floating sections were first washed 3 times in 0.01 M PBS and between each subsequent step except as noted. Sections were incubated in 1% hydrogen peroxide, followed by 5% normal goat serum (NGS) and 0.25% Triton X in PBS. Sections were incubated for 48 h at 4 °C in primary antibody directed against c-Fos (rabbit anti-Fos, 1:3,000, Santa Cruz Biotechnology) in PBS with 5% NGS and 0.25% Triton X. Sections were then incubated in biotinylated goat anti-rabbit secondary antibody (1:200, Jackson Labs) for 2 h, followed by incubation in avidin biotin complex (ABC kit, Vector Laboratories) for 2 h. Sections were washed 3 times in 0.1 M PB, then immunoreactivity was visualized with SG (SG substrate kit, Vector Laboratories). Sections were mounted on slides using a 0.0015% gelatin solution, dehydrated using a series of ethanol solution, defatted using Histoclear (Sigma-Aldrich), and coverslipped with Permount (Sigma-Aldrich).
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6

Seed Coat Structural Changes During Germination

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Desiccated C. papaya seeds were imbibed for 5 d on 1% agar-water and then heat-shocked at 35 °C for 4 h. Imbibed (non-germinating) and cracked (germinating) seeds were selected to observe the changes occurring in the seed coat. Individual seeds were encased in Jung tissue freezing medium (Leica Instruments GmbH) and sectioned using a Leica CM3050 S cryostat microtome. Sections (20 µm thick) were adhered to glass slides prepared with Kaiser’s glycerol gelatine (Merck) and freeze-dried overnight at –20 °C. Slides were desiccated using a series of ethanol dilutions (50%, 70%, and 100%), covered with a drop of Histoclear (Sigma) to exclude air bubbles and mounted with Histomount (Sigma). Slides were studied on a Stemi SV11 (Zeiss) microscope and images were captured with a colour Axiocam (Carl Zeis Ltd.). Representative images were taken corresponding to transverse sections through the top (micropylar and embryo radicle end) and middle (embryo hypocotyl region) of the seed.
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7

Histological Tissue Preparation and Staining

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In vitro models were washed in PBS prior to fixation in 4% paraformaldehyde (Fisher) for 2 h. Samples were dehydrated through a series of ethanols, followed by incubation in Histoclear (National Diagnostics, United States) then in 1:1 Histoclear:wax. Models were further incubated in wax before embedding and sectioning.
Paraffin sections were deparaffinized in Histoclear and rehydrated to dH2O before being stained in Mayer’s Hematoxylin (Sigma-Aldrich) for 5 min. Slides were then washed in dH2O and submerged in alkaline EtOH to blue the nuclei. Samples were dehydrated to 95% EtOH counter-stained in Eosin followed by dehydration to 100% EtOH. Slides were cleared twice in Histoclear and mounted in Omni-mount (National Diagnositcs) before imaging on a Leica microscope.
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8

Immunohistochemistry of Placental Tissue

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Immunohistochemistry procedure was performed as previously described5 (link). Briefly, paraffin embedded human placental tissue samples were sectioned, deparaffinized, and hydrated with Histoclear and ethanol (Sigma, St. Louis, MO, USA). Slides then underwent antigen retrieval using 10 mM sodium citrate (pH 6) buffer in a pressure cooker. Sections were blocked using DAKO Dual Endogenous Enzyme Block for Autostainer and 2.5% normal horse serum (Agilent, Santa Clara, CA, USA). Slides were then incubated with primary antibody m28-RNLS (1:500) overnight at 4 °C and secondary antibody IMPRESS Reagent anti-Rabbit IgG (Vector Laboratories, Burlingame, CA, USA). Antibody binding was detected using Vector DAB substrate kit and counterstained with hematoxylin (Vector Laboratories, Burlingame, CA, USA). Images were obtained at 20× and 60× using Echo® Revolve microscope. Staining specificity was determined by labeling with secondary antibody.
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9

Histological Analysis of Skin Sections

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Sections were deparaffinised in Histo‐Clear and sequentially rehydrated from 100% ethanol to distilled water, before incubating in Mayer's haematoxylin (Sigma‐Aldrich) for 5 min. Sections were washed in distilled water, submerged in alkaline ethanol for 30 s and sequentially dehydrated to 95% ethanol. Samples were counter‐stained in eosin (Sigma‐Aldrich) for 30 s and then dehydrated to 100% ethanol. Sections were incubated twice in Histo‐Clear then mounted in Omnimount (Scientific Laboratory Supplies) prior to imaging. Samples were imaged using a Leica microscope, and images were captured using the Leica EZ software. Four sections per skin biopsy (n = 40 skin biopsies, n = 160 sections) were stained and imaged along their entire length at 20× magnification, and images were stitched together using Fiji software to visualise the complete skin section.
18 (link) These images were used for quantification of epidermal thickness, interdigitation index, rête ridge morphology and dermal papilla morphology (Figure S1A,D–F).
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10

Quantifying Pancreas Cell Mass

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Isolated pancreata were isolated 10 weeks after surgery (age: 32 weeks) and were fixed in 10% (vol/vol) buffered formalin and embedded in paraffin wax within 24 h of removal. Slides (5 μm) were submerged sequentially in Histoclear (Sigma, UK) followed by washing in decreasing concentrations of ethanol to remove paraffin wax. Permeabilised pancreatic slices were blotted with ready-diluted anti-guinea pig insulin (Agilent Technologies, USA) and anti-mouse glucagon (Sigma, UK) primary antibody (1:1000). Slides were visualised by subsequent incubation with Alexa Fluor 488 (1:1000) and 568-labelled donkey anti-guinea pig and anti-mouse antibody (1:1000). Samples were mounted on glass slides using VectashieldTM (Vector Laboratories, USA) containing DAPI. Images were captured on a Zeiss Axio Observer.Z1 motorised inverted widefield microscope fitted with a Hamamatsu Flash 4.0 Camera using a Plan-Apochromat 206/0.8 M27 air objective with Colibri.2 LED illumination. Data acquisition was controlled with Zeiss Zen Blue 2012 Software. Fluorescence quantification was achieved using ImageJ (https://imagej.nih.gov/ij/). Whole pancreas was used to quantitate cell mass.
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