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6 protocols using sa00001 4

1

Immunoblot Analysis of Inflammatory Mediators

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We extracted and denatured the total protein in each group of cells and tissues. After SDS-gelelectrophoresis, we transferred them to nitrocellulose membranes. Then, we incubated the different primary antibodies including TLR4 (1:500, ab13556, Abcam, UK), NLRP3 (1:1000, ab263899, Abcam), IL-1β (1:1000, ab234437, Abcam), IL-18 (1:4000, 60,070-1-Ig, Proteintech, USA), caspase-1 (1:1000, 22,915-1-AP, Proteintech), NF-κB (1:2000, 10,745-1-AP, Proteintech), ASC (1ug/mL, ab175449, Abcam), Pro-MMP9 (2ug/mL, MAB9111, R&D), Claudin5 (1:4000, ab131259, Abcam) and β-actin(1:5000, 66,009-1-Ig, Proteintech)overnight 4 °C.After washing the membranes three times, the blots were incubated with fluorescent-basedanti-rabbit(1:6000, SA00001-2, Proteintech), anti-mouse(1:5000, SA00001-1, Proteintech) or anti-goat(1:5000, SA00001-4, Proteintech) IgG secondary antibody at room temperature.We visualized the proteins by chemiluminescence detection reagent (Thermo Fisher, Waltham, MA, USA). We used Image J software to analyze the gray value of all bands quantitatively.
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2

Immunoblotting Analysis of Colonic Proteins

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Total protein was extracted from the colon tissue samples via radio immunoprecipitation assay (RIPA) lysis buffer (WB-0071; Beijing Dingguo Changsheng Biotechnology Co., Ltd., Beijing, China). Protein samples were mixed with sample buffer (5X) and denatured by boiling. For immunoblots, proteins were separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis on a 10% polyacrylamide gel. Samples were electrophoresed at 80–100 V for 2 h until the dye migrated to the bottom of the gel. The proteins were transferred to polyvinylidene difluoride membranes and the membranes were blocked in blocking buffer (5% non-fat dry milk) for 2 h at room temperature, and incubated with primary antibodies against CRF-R1 (ab59023; 1:500; Abcam, Cambridge, MA, USA) or p-p65 NF-ΚB (3031; 1:1,000; Cell Signaling Technology, Inc., Danvers, MA, USA) and β-actin (wl01845; 1:1,000; Wanlei Biotechnology, Co., Ltd., Shenyang, China) overnight at 4°C. Membranes were then incubated with a horseradish peroxidase (HRP)-conjugated anti-goat (SA00001-4; 1:7,000; Proteintech Group, Inc., Rosemont, IL, USA) and anti-rabbit (Wla023a; 1:8,000; Wanlei Biotechnology, Co., Ltd.) secondary antibody for 1 h at room temperature. The proteins were visualized with a chemiluminescent substrate (WBULS0100; EMD Millipore, Billerica, MA, USA) using an imaging system (Bio-Rad Laboratories Inc., Hercules, CA, USA).
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3

Western Blot Analysis of Protein Expression

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Proteins were separated on 6–10% SDS-PAGE gel and transferred onto nitrocellulose membranes (Bio-Rad). After blocking for 1 h at room temperature with 5% nonfat dry milk or 3% BSA in PBST (PBS containing 0.1% Tween-20), the membranes were incubated overnight at 4 °C with primary antibodies against TRPC6 (1:500 dilution; sc-19196, Santa Cruz Biotechnology, Santa Cruz, CA, USA), p-NFATc4 (1:200 dilution; sc-135771, Santa Cruz), NFATc4 (1:500 dilution; BS1762, Bioworld Technology, St. Louis Park, MN, USA), Lamin B (1:1,000 dilution; 12987-1-AP, Proteintech, Chicago, IL, USA), and β-actin (1:2,000 dilution; sc-47778, Santa Cruz). Membranes were then washed three times in PBST for 15 min, followed by incubation at room temperature for 2 h with horseradish peroxidase (HRP)-conjugated rabbit anti-goat secondary antibody (1:5,000 dilution; SA00001-4, Proteintech), goat anti-rabbit secondary antibody (1:5,000 dilution; A0545, Sigma-Aldrich, St. Louis, MO, USA) or goat anti-mouse secondary antibody (1:5,000 dilution; SA00001-1, Proteintech). Protein bands were visualized using the enhanced chemiluminescence (ECL) kit (Thermo Scientific). Images were digitally captured using a ChemiDoc XRS System (Bio-Rad). The band densities were quantified using Quantity One software (Bio-Rad).
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4

Western Blot Analysis of EMT Markers

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Protein samples were mixed with 4× SDS loading buffer. Samples were boiled for 5 minutes at 98°C, and proteins were separated by Biofuraw Precast Gel (Tanon) and transferred to PVDF membranes. The following primary Abs and dilutions were used: Snail2 mAb (1:100, c‐166467; Santa Cruz Biotechnology), E‐cadherin polyclonal Ab, vimentin polyclonal Ab, fibronectin polyclonal Ab, and GAPDH polyclonal Ab (1:1000, 874‐1‐AP, 15613‐1‐AP, 10366‐1‐AP, 60004‐1‐AP; Proteintech). Secondary Abs were anti‐rabbit or anti‐mouse HRP‐conjugated IgG (1:2000, SA00001‐4; Proteintech). Membranes were incubated with 1 mL ECL western blotting substrate (Promega) for 1 minute at room temperature and then exposed to X‐ray film.
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5

Quantification of BRD7 Protein Levels

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The BRD7 protein levels in both serum and tissue samples were analyzed using western blotting. Briefly, proteins were extracted using RIPA lysis buffer (Roche Diagnostics, Basel, Switzerland) and the protein concentrations were estimated using the bicinchoninic acid protein assay reagent (Pierce, Thermo Fisher Scientific, Inc.). A total of 50 µg whole cell lysate was separated using 10% SDS polyacrylamide gels and then transferred to polyvinylidene difluoride membranes, which were blocked using TBST buffer containing 5% bovine serum albumin (Invitrogen; Thermo Fisher Scientific, Inc.) for 1 h at room temperature. The membranes were incubated with primary antibodies (anti-BRD7, dilution 1:500, 51009-2-AP; ProteinTech, Wuhan, China) at 4°C overnight. Following the primary incubation, the membranes were incubated with horseradish peroxidase-labeled rabbit anti-goat IgG (dilution 1:5,000, SA00001-4; ProteinTech) for 1 h at room temperature. Protein bands were evaluated by enhanced chemiluminescence detection system according to the manufacturer's protocol (Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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6

Western Blot Analysis of EMT Markers

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Protein samples were mixed with 4× SDS loading buffer. Samples were boiled for 15 min at 98°C, and proteins were separated by Biofuraw™ Precast Gel (Tanon) and transferred to NC membranes, and then, the following primary antibodies and dilutions were used: Snail2 monoclonal antibody (1:1000, c-166,467, Santa Cruz,), E-cadherin polyclonal antibody, vimentin polyclonal antibody, fibronectin polyclonal antibody, and GAPDH polyclonal antibody (1:1000, 874–1-AP, 15,613–1-AP, 10,366–1-AP, 60,004–1-AP, Proteintech). Secondary antibodies were anti-rabbit or anti-mouse HRP-conjugated IgG (1:2000, SA00001-4, Proteintech). Membranes were incubated with 1 mL ECL western blotting substrate (Promega) for 1 min at room temperature and then exposed to x-ray film.
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