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4 protocols using ripa protein lysis buffer

1

Western Blot Analysis of Mouse Liver Proteins

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Fresh mouse liver tissues were suspended in RIPA protein lysis buffer (Sigma-Aldrich, USA) with protease inhibitor cocktail and homogenized using Tissue Cell-Destroyer DS1000 (Novastar, China). After lysis for 30 ​min on ice, the supernatant was harvested via centrifugation at 4 ​°C, 12,000 ×g for 10 ​min. The protein concentration of liver tissues was determined using BCA Assay Kit (Biosharp, China). Equivalent protein samples were separated by SDS-PAGE and transferred into PVDF membranes (Millipore, USA). After blocked by 5% nonfat milk at room temperature for 1 ​h, the membranes were incubated with the primary antibody overnight at 4 ​°C followed by incubation with the secondary antibody. At last, all protein bands were shown using Immobilon Western Chemiluminescent HRP substrate (Millipore, USA) by a Luminescent Image Analyzer (Syngene, UK). Details of antibodies were listed in Supplementary Table S2.
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2

Apoptosis Assay with YAP Signaling

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MTT was purchased from Beyotime Institute of Biotechnology (Shanghai, China); Dulbecco's modified Eagle's medium (DMEM) was obtained from Gibco (Thermo Fisher Scientific, Inc., Waltham, MA, USA); Fetal bovine serum (FBS) was purchased from Hyclone (GE Healthcare Life Sciences, Logan, UT, USA); interleukin (IL)-3, IL-6 and stem cell factor (SCF) were purchased from R&D Systems, Inc., (Minneapolis, MN, USA); TRIzol reagent and Lipofect 2000 were purchased from Invitrogen (Thermo Fisher Scientific, Inc.); SYBR Green PCR Master Mix was obtained from Takara Bio, Inc., (Otsu, Japan); pLenti6.3/V5-DEST lentivirus vector and Packaging Mix were obtained from Invitrogen (Thermo Fisher Scientific, Inc.); RIPA protein lysis buffer was obtained from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany); Antibodies for western blotting including anti-YAP, protein kinase B (AKT1), B-cell lymphoma 2 (BCL2) and BCL2 like protein 1 were bought from Santa Cruz Biotechnology, Inc., (Dallas, TX, USA); apoptosis analysis kits (7-AAD, Annexin V-FITC) were obtained from Nanjing KeyGEN Biotech Co., Ltd., (Nanjing, China) and the ECL-PLUS/kit was obtained from GE Healthcare (Chicago, IL, USA).
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3

Western Blot Protein Analysis

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Radio immunoprecipitation assay (RIPA) protein lysis buffer (Sigma-Aldrich) was used to prepare cell lysates. Protein concentrations were determined using a BCA Protein Assay Kit (Thermo Fisher Scientific). Protein samples (50 μg) were separated by SDS-PAGE and then transferred to PVDF membranes (Millipore, Bedford, MA, USA). The membranes were blocked with skim milk, incubated with primary antibodies (overnight at 4 °C) and a horseradish peroxidase-conjugated secondary antibody (1 h at room temperature). To visualize the immunoreactive bands, the ECL Kit (GE Healthcare, Piscataway, NJ, USA) was used according to the instructions. β-actin served as the loading control. Quantity One software (Bio-Rad, Berkeley, CA, USA) was used to quantify protein bands. Antibody information was listed in Table S3.
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4

Breast Cancer Protein Extraction Protocol

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Protein was extracted from fresh-frozen breast cancer core biopsies using RIPA protein lysis buffer (Sigma Aldrich, Taufkirchen, Germany), consisting of 1 mM Na3VO4, 1.5 mM NaF, 1 mM phenylmethylsulfonyl fluoride (PMSF) and protein inhibitor cocktail (pepstatin, leupeptin and chymostatin each 10 μg/mL). The tissues were homogenized with protein lysis buffer using the Precellys® 24-tissue homogenizer (Bertin Instruments, Frankfurt am Main, Germany) with reinforced tubes (MK28-R hard tissue grinding kit, 2 mL reinforced tubes with screw cap and skirt; VWR, Darmstadt, Germany) with an interval of three times 30 s at 4500 rpm. Afterwards, the tubes were centrifuged at high speed for 1 min. The supernatant was used for further analysis. Protein concentrations were measured using the EZQ protein quantitation kit (Thermo Fisher, Darmstadt, Germany) in accordance with the manufacturer’s instructions. Egg albumin served as the protein standard, provided by the manufacturer.
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