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1

Permeability Assay of Drugs Using MDCK Cells

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The nine drugs tested (amitryptiline, atenolol, carbamazepine, fleroxacin, loperamide, norfloxacin, pefloxacin, propranolol and zolpidem) and HPLC grade solvents (acetonitrile, methanol and water) were purchased from Sigma-Aldrich (Barcelona, Spain). MDCK cell line was purchased from ATCC (USA) and MDCK-MDR1 cells were provided by Dr. Gottessman, MM (Nathional Institutes of Health, Bethesda). Pig brain homogenate was kindly supplied by a local slaughterhouse and fresh unfertilized chicken eggs were bought in a local supermarket. Table 2 shows the molecular properties of the nine drugs mentioned above.
Dulbecco’s modified Eagle’s medium (DMEM) with high content of glucose, L-glutamine, HEPES, MEM non-essential aminoacid, penicillin−streptomycin, trypsin-EDTA, Hank’s balanced salt solution (HBSS) and fetal bovine serum (FBS) for the cell culture of MDCK and MDCK-MDR1 cell lines were purchased from Sigma-Aldrich.
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2

Characterization of Multidrug-Resistant Klebsiella and Escherichia Strains

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EA27 is a multidrug resistant clinical isolate of Klebsiella aerogenes exhibiting a mutation in the quinolone resistance-determining region, a porin deficient phenotype and an energy-dependent efflux9 (link),25 (link). EA294 is the acrA::Kanr derivative strain of EA289 (not presented in this study), which itself is a kanamycin-sensitive derivative strain of EA2726 (link). EA3, EA117, KP 55, ARS100 and ARS108 are multidrug resistant clinical isolates of Klebsiella aerogenes (EA3, EA117) K. pneumoniae (KP55) and Escherichia coli (ARS100, ARS108) exhibiting a porin deficient phenotype and expression of the AcrB efflux pump27 (link),28 .
All strains were cultured in Mueller Hinton II broth (MHII) or Luria Broth (LB) at 37 °C. EA294 was grown in MHII or LB supplemented with kanamycin (50 µg.ml−1). The quinolones ciprofloxacin (CIP), enrofloxacin (ENR), fleroxacin (FLE), nalidixic acid (NAL), norfloxacin (NOR), sparfloxacin (SPA), chloramphenicol and erythromycin were purchased from Sigma-Aldrich. Rosoxacin (ROS) was purchased from LGC Standards Ltd. The quinolones were dissolved in Milli-Q water supplemented with 0.1 to 0.4% (v/v) NaOH, chloramphenicol and erythromycin were dissolved in 50% ethanol. Physicochemical parameters of the studied quinolones are listed in Supplementary Fig. 1.
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3

MALDI-TOF and HPLC Analytical Methods

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SLGO and PVK were purchased
from Budweiser Chemical Reagent Co., Ltd. (Beijing, China). α-Cyano-4-hydroxycinnamic
acid (CHCA), trifluoroacetic acid (TFA), methanol, phenylalanine (Phe),
proline (Pro), histidine (His), lysine (Lys), adenine (A), uracil
(U), thymine (T), lomefloxacin (LOM), fleroxacin (FLE), enrofloxacin
(ENR), ciprofloxacin (CIP), norfloxacin (nor), safloxacin hydrochloride
(SAR), bisphenol A (BPA), bisphenol B (BPB), bisphenol F (BPF), bisphenol
S (BPS), tetraethylammonium chloride (TC), annitol (MA), citric acid
(CA), and palmitic acid (C16) were purchased from Sigma-Aldrich (USA).
Milk was purchased from a local shop. All chemicals were used as received
without further purification. Ultrapure water with an electrical resistance
of >18.2 MΩ from Milli-Q was used for all experiments.
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