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6 protocols using polyacrylamide gel

1

Protein Quantification and Western Blotting

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The concentration of protein extracted from tissues and cells was measured using the BCA Kit (Wuhan Boster Biological Technology, Ltd., Wuhan, Hubei, P.R. China). The extracted protein was then added to wells with loading buffer (30 μg/well) and boiled at 95°C for 10 min. Proteins were then separated on 10% polyacrylamide gels (Wuhan Boster Biological Technology, Ltd.) by electrophoresis. Proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes, blocked with 5% bovine serum albumin (BSA; Thermo Fisher Scientific, Rockford, IL, USA), and incubated with primary antibodies overnight at 4°C. Membranes were then rinsed with Tris-buffered saline/Triton X-100 (TBST) (Sigma-Aldrich) and incubated with corresponding secondary antibodies at room temperature for 1 h. The membranes were washed again, and chemiluminescence reagent was added for image development. Images were developed using a Gel Doc EZ imager (Bio-Rad, Hercules, CA, USA) with β-actin used as an internal reference. The gray value of the target band was analyzed using Western blotting image analysis software (Alpha Innotech, Hayward, CA, USA).
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2

Quantification of Protein Expression by Western Blot

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The concentration of protein extracted from tissues and cells was measured using the BCA kit (Wuhan Boster Biological Technology., Ltd, Wuhan, Hubei, China). The extracted protein was then added to wells with loading buffer (30 μg/well) and boiled at 95°C for 10 min. Proteins were then separated on 10% polyacrylamide gels (Wuhan Boster Biological Technology., Ltd, Wuhan, Hubei, China) by electrophoresis for 45-70 min at a voltage of 80-120 V and with a wet transmembrane voltage of 100 mV for 45-70 min. Proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes, sealed with 5% bovine serum albumin (BSA) for 1 hour at room temperature, and incubated with Bmi-1 (1:20000 dilution; ab126783, Abcam, Cambridge, UK) and β-actin (1:10000 dilution; ab8226, Abcam, Cambridge, UK) primary antibodies overnight at 4°C. Membranes were then rinsed with Tris-buffered saline/Triton-X100 (TBST) (3 times × 5 min) and incubated with corresponding secondary antibodies at room temperature for 1 h. The membranes were washed again (3 times × 5 min) and chemiluminescence reagent was added for image development. Images were developed using a Gel Doc EZ imager (Bio-Rad, Hercules, California, USA) with β-actin as used as internal reference. The gray value of the target band was analyzed using western blotting image analysis software (Alpha Innotech, Hayward, California, USA).
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3

Protein Extraction and Western Blot Analysis

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The proteins from cells and tissue samples in each group were extracted and measured using BCA kit (Wuhan Boster Biological Technology, Ltd). Loading buffer was added for boiling at 95°C for 10 mins. Thirty micrograms of proteins were separated in 10% polyacrylamide gel (Wuhan Boster Biological Technology. LTD). The resolving proteins were transferred into the PVDF membrane. The blocking was performed using 5% BSA at room temperature. The primary antibodies of DMGDH, E-cadherin, Vimentin (1:1000) and β-actin (1:3000) were purchased from Abcam Cambridge, MA, USA. The primary antibodies were added and incubated at 4°C overnight. Then, the membrane was washed thrice with TBST for 5mins. The corresponding secondary antibodies (Shanghai MT-bio, China) were added for incubation for 1 h at room temperature. The membrane was washed thrice for5mins before color development. Bio-rad Gel Dol EZ imager (GEL DOC EZ IMAGER, Bio-Rad, California, USA) was used to obtain images. The intensity of the target strip was analyzed by ImageJ software. Each test was repeated thrice to obtain the average value.
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4

Protein Extraction and Western Blot Analysis

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The total protein was extracted and the concentration was detected by a bicinchoninic acid (BCA) kit (Wuhan Boster Biological Technology, Hubei, China). The extracted protein was added with loading buffer (30 μg/well) and boiled at 95°C for 10 min, and then conducted with electrophoretic separation by 10% polyacrylamide gel (Wuhan Boster Biological Technology, Hubei, China) and transferred onto polyvinylidene fluoride (PVDF) transmembranes and fixed by 5% bovine serum albumin (BSA) for 1 h. The protein was added with primary antibodies Ki-67 (1:1,000, Abcam, Cambridge, MA, USA), cyclin D1, cleaved caspase-3, Bax, Bcl-2, PTEN (all 1:1,000 and from Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-pan-Ago antibody, clone 2A8 (1:1,000, Millipore, MA, USA), and GAPDH (1:2,000, Jackson ImmunoResearch, PA, USA), incubated at 4°C for 24–48 h, and placed in secondary antibody, which was marked by horseradish peroxidase (1:500, Jackson ImmunoResearch, PA, USA) and then incubated for 1 h. The images were obtained by an Odyssey two-color infrared fluorescence scanning imaging system. The gray value was analyzed by Quantity One imaging analysis software.
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5

BCA Protein Assay and Western Blot

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According to instructions of the BCA (bicinchoninic acid) protein assay (Beyotime Biotechnology Co., Shanghai, China), cell proteins were extracted to determine the protein concentration. Loading buffer was added to the extracted proteins and boiled at 95°C for 10 min. Thirty micrograms of protein sample were loaded into each well of a 10% polyacrylamide gel (Wuhan Boster Biological Technology Ltd., Wuhan, Hubei, China) and separated by electrophoresis. Then, the proteins were transferred to a polyvinylidene fluoride (PVDF) membrane and incubated with 5% bovine serum albumin (BSA) at room temperature for 1 h. Next, the PVDF membrane was incubated with primary antibodies against, p-PI3K, PI3K, phosphorylated (p)-AKT, AKT, p-mTOR, mTOR, LC3, Beclin1, p62 and GADPH (Cell Signaling Technology, Inc.) at 1:1000 dilutions overnight at 4°C. After three washes with Tris-buffered saline containing Tween (TBST) for 5 min each, the signals on the PVDF membrane were developed by incubating the membrane with chemiluminescence reagents; GADPH was used as the internal reference. The gray value of each target band was analyzed using ImageJ software.
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6

Western Blot Protein Analysis Protocol

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Proteins were extracted from tissue samples, and a bicinchoninic acid (BCA) kit (Wuhan Boster Biological Technology Co., Ltd., Wuhan, China) was used to detect the protein concentration. After sample buffer was added (30 µg per sample each well), proteins were boiled at 95°C for 10 min. Then, the proteins were separated using 10% polyacrylamide gel (Wuhan Boster Biological Technology Co., Ltd., Wuhan, China) electrophoresis, with 80 V electrophoretic voltage converted to 120 V. After electrophoresis, proteins were transferred to polyvinylidene fluoride (PVDF) membranes with 100 V transfer-molded voltage lasting for 45 to 70 min. Afterwards, samples were incubated at room temperature for 1 h with 5% bovine serum albumin (BSA), and were incubated with primary antibodies (1: 1000 dilution) (all from Abcam Inc., Cambridge, MA, USA), overnight at 4°C. Then, samples were washed with tris-buffered saline Tween 20 (TBST) 3 times (5 min/time). The corresponding secondary antibody was added for incubation at room temperature for 1 h, after which membranes were washed 3 times (5 min/time). Development was completed with chemiluminescence reagents. GAPDH was used as an internal reference. Bands were visualized with a Bio-Rad Gel Doc EZ imager (Gel Doc EZ imager, Bio-Rad, California, USA). ImageJ software was applied to analyze the intensity of the target bands.
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