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5 protocols using rap1b

1

Manipulation of HEK-293T Cell Signaling Pathways

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Human embryonic kidney 293T (HEK-293T) cells were grown in Dulbecco’s modified eagle medium (DMEM) with 1% penicillin/streptomycin, 1% sodium pyruvate and 10% FBS. Ctx (Calbiochem, Cat. No. 227035) was used at a concentration of 0.1 μg/ml, Iso was used at a concentration of 0.1 μM, NECA was used at a concentration of 10 μM, and Bay 60–6583 (Bay) (Tocris, Cat. No. 4472) was used at concentration of 0.1 μM unless otherwise stated. The antibodies used were monoclonal rabbit anti-Rap1B (Cell signaling, 36E1), mouse anti-c-myc (Santa Cruz Biotechnology, 9E10, sc-40), polyclonal rabbit anti-c-myc (Covance, PRB-150P-200), rabbit anti-HA (Covance, PRB-101P-500) and mouse anti-HA (Covance, MMS-101P-1000, 16B12). Mevastatin was used at a concentration of 10 μM.
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2

Neutrophil Protein Expression Analysis

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To examine protein expression in various cellular domains, neutrophils were either maintained in suspension without stimulation or stimulated with fMLP in suspension or plated on fibrinogen-coated/anti-CD11b–coated plates for specific times, as indicated in the figures. WCL was performed using standard triton-based lysis buffer. Triton insoluble or DRMs were prepared as described before (Kumar et al., 2012 (link)). Cell lysates containing equal amounts of protein were separated by SDS-PAGE and probed for p-Akt, Akt, p-p38, p38, p-Erk, ERrk, and Rap1b (all from Cell Signaling Technology, Boston, MA), actin (Sigma-Aldrich), CD11b (Abcam), and Rap1 (BD). For immunoprecipitation, rested or stimulated WT and Rap1b−/− neutrophils were lysed in 1% NP-40 lysis buffer and 500 µg protein was subjected to each immunoprecipitation with 2 µg anti–SHP-1 antibody, followed by protein A/G agarose beads. Blots were probed with anti–phospho-tyrosine 4G10 antibody, followed by anti–SHP-1 (Santa Cruz Biotechnology, Inc.) antibody.
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3

Antibody Staining and Signaling Pathways

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Antibodies against αL/LFA-1 (2D7), αM/Mac1/CD11b (M1/70), β2 (C17/16), and Rap1 were obtained from BD. Human anti–ICAM-1 (HA58) and β1 (eBioHmb1-1) were obtained from eBioscience. Phospho -Akt (Ser473), Akt, p-p38, p38, p-Erk, Erk, Rap1b, and anti–VE-cadherin (clone 55-7H1) were purchased from Cell Signaling Technology. Anti–SHP-1 antibody was obtained from Santa Cruz Biotechnology, Inc. Rhodamine-labeled phalloidin, IgG conjugated to Alexa Fluor 488, Alexa Fluor 594, Alexa 6Fluor 47, or Cy5 were obtained from Invitrogen. Anti-PIP3 antibody and PTEN inhibitor SF-1670 were from Echelon Biosciences. Antibody used for immunoblotting of CD11b was from Abcam, Src-inhibitor PP2, SHP-1/2 inhibitor NSC87877, and serine-protease inhibitor DFP were obtained from EMD Millipore. Akt-inhibitor MK2206 was obtained from Selleckchem. Rac inhibitor NSC23766 was a gift from Y. Zheng (Cincinnati Children’s Hospital Medical Center, Cincinnati, USA). Anti–β-actin antibody and PI3K inhibitor Ly294002 were obtained from Sigma-Aldrich.
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4

Western Blot Analysis of Signaling Proteins

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Cell lysates were electrophoresed (6 ) and incubated with primary antibodies (concentration 1:1000 unless otherwise indicated): phospho-p38 (p-p38), total p38 (p38), actin, RAP1B (Cell Signaling), TTP (SantaCruz), p-Serine (Abcam), IL-6 (R&D Systems), GALR2 (Alpha Diagnostics) and GAPDH (Millipore/Upstate). HRP-conjugated secondary antibodies (Jackson Immuno-Research) were visualized by SuperSignal Substrate (Pierce).
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5

Cellular Signaling Pathway Analysis

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All chemicals were purchased from Sigma-Aldrich (St. Louis, MO), unless indicated otherwise. Antibodies were from Cell Signaling Technology, Inc. (Danvers, MA): Epac1, Vav2, Rap1a, Rap1b, Tiam, diphospho-MLC (Thr18/Ser19) and phospho-MYPT1 (Thr853). All antibodies are rabbit monoclonal antibodies. HRP-linked anti-actin, and GAPDH were rabbit monoclonal antibodies. ECIS arrays (8W10E+) were from Applied BioPhysics (Troy, NY). Rac1 G-LISA Activation Assay Kit was purchased from Cytoskeleton Inc. (Denver, CO). LacZ adenoviral control vector was obtain from Invitrogen (Carlsbad, CA).
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