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4 protocols using hrp conjugated matched secondary antibodies

1

Quantification of DNA Repair Proteins

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Western blots were performed using standard methods. Blots were incubated with primary antibodies commercially obtained against: anti-MUS81 (1:1000; Santa Cruz Biotechnologies), anti-SMARCAL1 (1:2000; Abcam), anti-RAD51 (1:5000; Abcam), anti-BrdU (1:50, Becton Dickinson), anti-BRCA2 (1:1000; Bethyl), anti-Lamin B1 (1:10000; Abcam), GFP (1:1000; Santa Cruz Biotechnology), GAPDH (1:5000; Millipore). HRP-conjugated matched secondary antibodies were from Jackson Immunoresearch and were used at 1:40 000.
Horseradish peroxidase-conjugated goat specie-specific secondary antibodies (Santa Cruz Biotechnology, Inc.) were used. Quantification was performed on scanned images of blots using ImageJ software, and values are shown on the graphs as indicated.
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2

Comprehensive Immunoblotting and Immunofluorescence Assay

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The primary antibodies used were: anti-MUS81 (1:1000; Santa Cruz Biotechnologies), anti-DDK (Flag Origene, WB 1:1000, IF 1:200), anti-cMYC (1:1000; Abcam), anti-CK2 (1:1000; Cell Signaling Technologies), anti-RxxpS/T (1:1000; Cell Signaling Technologies), anti-SLX4 (WB 1:1000, IF 1:200, Novus biologicals), anti-pS10H3 (1:1000, Santa Cruz Biotechnologies), anti-H3 (1:1000, Santa Cruz Biotechnologies), anti-EME1 (1:1000, Santa Cruz Biotechnologies), anti-EME2 (1:500, Invitrogen), anti-Cyclin A (WB: 1:1000, IF: 1:100, Santa Cruz Biotechnologies), anti 53BP1 (1:400, Millipore), anti-BrdU (1:50, Becton Dickinson), anti-pS139H2A.X (1:1000, Millipore), anti-γ-Tubulin (1:200, Sigma-Aldrich), anti-pS87MUS81 (WB 1:1000, IF 1:200, Abgent) and anti-Lamin B1 (1:10 000; Abcam). HRP-conjugated matched secondary antibodies were from Jackson Immunoresearch and were used at 1:40 000.
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3

Antibody Detection in DNA Damage Response

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The primary antibodies used were: anti-SMARCAL1 (#ab154226, 1:1000; Abcam), anti-pCHK2 (#2261, 1:1000; Cell Signaling Technology), anti-CHK2 (#sc5278, 1:1000; Santa-Cruz Biotechnology), anti-pKAP1 (#A300-767A, 1:1000; Bethyl Laboratories), anti-KAP1 (#A300-274A, 1:1000; Bethyl Laboratories), anti p-ATM (#4526, WB 1:800; Cell Signaling Technology), anti-pATM (#05-740, IF 1:300; Millipore), anti-ATM (#NB100-104, 1:1000; Novus Biologicals), anti-pS139H2A.X (#JBW301, 1:1000; Millipore), anti-LaminB1 (#ab16048, 1:20,000; Abcam), rat anti-BrdU (anti-CldU, #ab6326, 1:60; Abcam), mouse anti-BrdU (anti-IdU, #347580, 1:10; Beckton-Dickinson). HRP-conjugated matched secondary antibodies were from Jackson ImmunoResearch and were used at 1:40,000.
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4

Immunostaining and Western Blot Antibodies

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The primary antibodies used were: anti-pS345CHK1 (1:100, Cell Signaling Technologies), anti-pThr1989ATR (1:100, GeneTex) anti-pS10H3 (1:1000, Santa Cruz Biotechnologies), anti-Cyclin A (IF: 1:100, Santa Cruz Biotechnologies), anti-53BP1 (1:300, Millipore), anti-BrdU (1:50, Becton Dickinson; anti-IdU detection), anti-pS87MUS81 (WB 1:1000, IF 1:200, Abgent), anti-RAD51 (WB 1:1000, IF 1:100 Bioss Antibodies), anti-α-Tubulin (1:50, Sigma-Aldrich), anti-Flag (1:1000, Sigma-Aldrich) and anti-Lamin B1 (1:10000, Abcam). HRP-conjugated matched secondary antibodies were from Jackson Immunoresearch and were used at 1:20 000.
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