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Puromycin

Manufactured by Biogems

Puromycin is a lab equipment product used as a selection marker in cell culture experiments. It functions by inhibiting protein synthesis, allowing for the identification and selection of cells that have successfully integrated a specific genetic construct.

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3 protocols using puromycin

1

Generating shRNA Lentiviruses for Genetic Manipulation

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To produce shRNA lentiviruses, 2 × 106 human embryonic kidney 293T cells (ATCC #CRL-3216) were plated into a 10-cm2 plate and transfected 16 hours later with 8 μg of pLKO-shRNAs (Addgene, #10879 for CTR; Sigma-Aldrich, #TRCN0000033697 for RING1B; and Sigma-Aldrich, #TRCN0000014881 for FOXA1), 2 μg of pCMV-VSV-G, and 6 μg of pCMV-dR8.91 plasmids using calcium phosphate. Seventy-two hours after transfection, the viral supernatant was collected, passed through a 0.45 μM polyethersulfone filter, and used to transduce MDA-MB-231 and T47D cells. Specifically, 3 × 105 cells were plated into a six-well plate followed by the addition of viral media with polybrene (8 μg/ml; Millipore-Sigma, #TR-1003-G). Cells were centrifuged for 1 hour at 1000g at 32°C and then incubated overnight with fresh viral media. Viruses were removed and complete culture medium was added for cell recovery. Cells were selected 24 hours after recovery with puromycin (2 μg/ml; Biogems, #5855822) and were maintained in selection. All experiments were performed within 2 weeks after transduction. The shRING1B oligos were cloned into the pLKO-tet-on plasmid, and LT3GEPIR-shRenilla luciferase was used as the doxycycline-inducible control. Lentiviruses were produced from the two plasmids as described above. Cells were treated with doxycycline (100 ng/ml) for 2 days before culturing them in HD media for 72 hours.
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2

Generating Lentiviral Knockdown Lines

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The following MISSION pLKO.1-puro-shRNAs were purchased from Sigma-Aldrich: control (TRCN0000382379), LSD2 (TRCN0000257375) (Garcia-Martinez et al. 2022), RING1B (TRCN000033697) (Zhang et al. 2021) , KDM6A (TRCN0000359261), sh53BP1 (TRCN0000018866 and TRCN0000018869), and shNSD3 (TRCN0000015614). Lentiviruses were generated in HEK293T cells. HNSCC lines were incubated overnight with media containing lentiviruses supplemented with 8 µg/mL polybrene (Millipore-Sigma TR-1003-G). Transduced cells were selected with puromycin (Biogems 5855822).
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3

Generating shRNA Lentivirus for Functional Studies

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To produce shRNA lentiviruses, 2 × 106 HEK293T cells (ATCC #CRL-3216) were plated into a 10 cm2 plate and transfected 16 h later with 8 μg of pLKO-shRNAs (Addgene #10879 for CTR; Sigma-Aldrich #TRCN0000033696 and TRCN0000033697 for RING1B; and Sigma-Aldrich #TRCN0000014881 for FOXA1), 2 μg of pCMV-VSV-G, and 6 μg of pCMV-dR8.91 plasmids using calcium phosphate. 72 h after transfection, viral supernatant was collected, passed through a 0.45 μM polyethersulfone filter, and used to transduce MDA-MB-231 and T47D cells. Specifically, 3 × 105 cells were plated into a 6-well plate followed by the addition of viral media with 8 μg/ml polybrene (Millipore-Sigma #TR-1003-G). Cells were centrifuged for 1 h at 1000×g at 32 °C then incubated overnight with fresh viral media. Viruses were removed and complete culture media was added for cell recovery. Cells were selected 24 h after recovery with 2 μg/ml of puromycin (Biogems #5855822) and were maintained in selection. All experiments were performed within 3 weeks post transduction.
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