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15 protocols using pa tu 8988t

1

Cell Line Authentication and Culture Conditions

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All the human cell lines (Hs766T, BxPc3, Patu8988T and Patu8902) used in this study were purchased from ATCC, used below passage 25 and continuously cultured in 100 U/ml penicillin and 100 U/ml streptomycin. The cell lines were authenticated by short tandem repeat (STR) profiling at the Institute for Applied Cancer Sciences, MD Anderson Cancer Center. The Patu8988T, Hs766T and Patu8902 cell lines were routinely cultured in Dulbecco’s modified Eagle’s medium (DMEM) with 10% FBS (Invitrogen). BxPc3 cell lines were routinely cultured in Roswell Park Memorial Institute (RPMI) 1640 (Invitrogen) with 10% FBS. Primary mouse cell lines were established in the laboratory (AK-B6, AK192, HY6468, PJAK4217, PJAK4298) as described previously34 (link) and were routinely cultured in Roswell Park Memorial Institute (RPMI) 1640 (Invitrogen) 10% FBS (Invitrogen). For inducible Kras derived cell lines, 1 ug/ml of doxycycline was directly added to the media. For metabolic and metabolomic assays, 10% dialysed FBS (Atlanta Biologicals Inc.) was used. The cell lines were mycoplasma free, based on tests done monthly in the laboratory using Lonza’s MycoAlert Mycoplasma Detection Kit assays with confirmatory tests by PCR-based assays.
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2

Pancreatic Cancer Cell Lines and NK Cell Isolation

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Cell lines: The human pancreatic cancer cell lines Panc-1 and PaTu8988t cells were purchased from ATCC. The cells were cultured in DMEM with 10% FCS and 1% P/S at 37 °C and 5% CO2.
NK cells: Leukocytes from leukoreduction system chambers of healthy donors were provided by the blood bank of the University Hospital of Giessen and Marburg. Peripheral blood mononuclear cells (PBMCs) were purified by ficoll density centrifugation followed by a centrifugation step at 10 g for 5 min to deplete the sample of monocytes. NK cells were then isolated using a negative selection NK cell isolation kit (Miltenyi Biotec, Bergisch Gladbach, Germany). Isolated NK cells were cultured in IMDM medium with 10% FCS, 1% P/S, 100 ng/mL IL-15 and 200 U/mL IL-2 and rested at 37 °C overnight before killing assays were performed.
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3

Cellular Response and Gene Expression

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Cellular drug sensitivity and gene expression were analyzed in 89 lymphoblastoid cell lines (LCLs) obtained from the National Human Genome Research Institute Sample Repository for Human Genetic Research at the Coriell Institute for Medical Research (www.coriell.org, cell line identifiers in Supplementary Methods, available online). The human adenoductal pancreatic carcinoma cell lines MIA-PaCa-2, PaTu-8988t, and L3.6 were obtained from ATCC (Manassas, VA).
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4

Cell Line Characterization and Maintenance

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The female mouse cell lines KP panc and KP lung were kindly provided by Dr. Nabeel M. Bardeesy (Massachusetts General Hospital Cancer Center). Human cells lines AsPC-1, MIA-PaCa-2, PATU-8988T and HEK293T were purchased from the ATCC. Cell lines were verified to be free of mycoplasma contamination and the identities of all were authenticated by STR profiling. KP panc, KP lung and AsPC-1 cells were maintained in RPMI media (Gibco) containing 2 mM glutamine, 10% fetal bovine serum, 1% penicillin and streptomycin. MIA PaCa-2, PATU-8988T and HEK293T cells were maintained in DMEM media (Gibco) containing 4.5g/L glucose, 110mg/L pyruvate, 4mM glutamine, 10% fetal bovine serum, penicillin and streptomycin.
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5

Establishment and Characterization of Pancreatic Cancer Cell Lines

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Human pancreatic cancer cell lines (MIAPaCa2, PANC1, BxPC3, KP4, HuPT3, PK1, PA-TU-8988T, TCCPAN2 and AsPC1) were obtained from the American Type Culture Collection (ATCC, Rockville, MD). They were maintained in RPMI-1640 (Wako Pure Chemical Industries Co. Ltd., Osaka, Japan) supplemented with 10% fetal bovine serum (FBS). The BOP-induced hamster pancreatic cancer cell line (HPD1NR) was a kind gift of Dr. Masahiro Tsutsumi. These cells were used in previous studies (5 (link),22 (link)). They were maintained in DMEM (Wako) supplemented with 10% FBS. Cells were cultured at 37°C in 5% CO2 humidified air. Cell authentication (STR profile) of all human cancer cell lines was performed using the GenePrint System (10 loci) by BEX Co. Ltd within six months of use.
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6

Establishing Stable Cell Lines for GRN Suppression

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Human PDAC cell lines, PaTu8988T, MiaPaCa2, and HupT4, were purchased from the American Type Culture Collection. Stable cell lines for GRN suppression were established by transfecting GRN shRNA into PaTu8988T and MiaPaCa2. Scramble shRNA was included as negative control (nc) for transfection. Sequences of shRNA and nc are as follows,
sh_GRN1: AGGCCCTGATAGTCAGTTCGAATtgacaggaagATTCGAACTGACTATCAGGGC
sh_GRN2: AGGAAGGACACTTCTGCCATGATtgacaggaagATCATGGCAGAAGTGTCCTTC
sh_GRN3: AGGTGACCTGATCCAGAGTAAGTtgacaggaagACTTACTCTGGATCAGGTCAC
nc: AGGGAATCTCATTCGATGCATACtgacaggaagGTATGCATCGAATGAGATTCC
All transfectants were maintained in 10% FBS-supplemented Dulbecco’s Modified Eagle Medium (DMEM) with 2 mg/mL of G418 (Life Technologies, Thermo Fisher Scientific, MA). Exogenous PGRN stimulation was performed by incubating HupT4 with or without 0.4 ng/mL rPGRN for 1 day.
For GP82, it was established from the tumor of an FKPC2GP mouse no. 82. After enzymatic digestion of the tumor, the desegregated cells were grown and maintained in 10% FBS-supplemented DMEM. After 3rd passage, the cell expression of epithelial marker EpCAM and fibroblast marker α-SMA was assessed by immunofluorescence staining and flow cytometry, and confirmed enrichment of epithelial cells with <1% contamination of fibroblasts.
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7

Cell Culture and Transfection Protocol

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HEK293, HEK293T and PDAC cell lines L3.6, BxPC3, Panc1, PaTu8988T, and HPNE (an HTERT-immortalized normal pancreatic epithelial cell line) were obtained from American Type Culture Collection (ATCC). They were maintained under recommended culture conditions. Cells were detached from the plates using 0.25% Trypsin/EDTA (Gibco) and transferred to a new 6 well dishes 24 h before transfection. Plasmid and Lipofectamine 2000 (Invitrogen) were mixed in Opti-MEM (Gibco) medium and incubated for 10 min before transfection. The medium was changed 4–6 h after transfection.
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8

Culturing and Transducing Human Pancreatic Cancer Cells

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Human pancreatic cancer cell lines PANC-1, BxPC-3, PaTu8988T were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). BxPC-3 cells were maintained in RPMI 1640 medium supplemented with 2.5 g/L glucose, 1 mM sodium pyruvate, and 10% fetal bovine serum. PANC-1 and PaTu8988T cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% FBS and 2 mM L-glutamine. Cells were cultured in a 37 °C, 5% CO2 incubator with routine mycoplasma check once every month.
Plasmids for lentivirus packaging were purchased from Shanghai Genechem Inc (Shanghai, China). Plasmids were transfected in HEK-293 T cells by using Lipofectamine 3.0 (Invitrogen) following the manufacturer's instructions. The lentivirus-containing supernatant was collected 48 and 72 h after transfection, and cells were transfected with lentivirus. The pancreatic cancer cell lines with stable gene expression were selected in culture medium supplemented with puromycin (1 μg/ml; Sigma-Aldrich, St. Louis, MO, USA).
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9

Isolation and Characterization of PDAC Cell Cultures

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Eight primary PDAC cell cultures (PDAC1, PDAC-2, PDAC-3, PDAC-4, PDAC-5, PDAC-6, PDAC-7 and PDAC-8) were isolated from patients at the University Hospital of Pisa (Pisa, Italy), as described previously [21 (link)], while the human pancreatic duct epithelial-like cells hTERT-HPNE, and the PDAC cell lines Pa-Tu-8988T (PaTu-T) and Pa-Tu-8988S (PaTu-S) were purchased from the American Type Culture Collection (ATCC, Manassas, VA) and DSMZ-German Collection of Microorganisms and Cell Cultures (Braunschweig, Germany), respectively. The primary cells were cultured in RPMI-1640, supplemented with 10% heat-inactivated (HI) FBS and 1% streptomycin/penicillin at 37°C, in a 5% CO2 humidified atmosphere and harvested with trypsin-EDTA in their exponentially growing phase. The cell lines hTERT-HPNE, Pa-Tu-8988S (PaTu-S) and Pa-Tu-8988T (PaTu-T), PaTu-T cells lentiviral transduced with Gal-4 (PaTu-T/Gal-4) or lentiviral mock-transduced (PaTu-T/Mock) were cultured in DMEM high glucose (GIBCO, Invitrogen), with 10% HI-FBS and 1:100 streptomycin/penicillin.
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10

Culturing Pancreatic Cancer Cell Lines

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Pancreatic cancer cell lines (AsPC1, CaPan1, Colo357, Hs766t, IMIM-PC1, MiaPaca2, Panc1, Panc89, PaTu 8988t) were obtained from the American Type Culture Collection (ATCC, Manassas, VA). Cells were cultured under standard conditions (37 °C, 5% CO2) in RPMI 1640 Medium (Sigma, Taufkirchen, Germany) supplemented with 10% heat-inactivated fetal bovine serum (FBS Superior, Biochrom, Berlin, Germany), unless stated otherwise.
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