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15 protocols using gw0742

1

Autophagy Regulation in Metabolism

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GW501516, GW0742 and 3-MA were purchased from Sigma-Aldrich (MO, USA). The antibodies used for western blot included anti-LC3A/B, anti-p62, anti-Atg7, and anti-Beclin1 (Cell Signaling Technology); anti-Atg5 (Novus Biologicals); anti-GAPDH (KangCheng Bio-tech); and anti-PPARδ (Santa Cruz Biotechnology). All the other chemicals were from Sigma-Aldrich Corporation unless specifically noted.
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2

Agonist-Induced Cell Culture Study

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Human MKPL-1, MOLM-13, K562, and Jurkat cells were cultured in RPMI1640 medium containing 10% FBS, 1% penicillin/streptomycin. 293T cells were cultured in DMEM medium containing 10% FBS, 1% penicillin/streptomycin. For agonists treatment, cells were cultured with 9-cis-RA (1μM, Sigma-Aldrich #R4643), ATRA (1μM, Sigma-Aldrich #R2625), Bezafibrate (60μM, Sigma-Aldrich #B9273), Fenofibrate (30μM, Sigma-Aldrich #F6020), GW0742 (0.05μM, Sigma-Aldrich #G3295) or Rosiglitazone (5μM, Sigma-Aldrich #R2408) for 48–72h, respectively. All cultures were incubated at 37°C in 5% CO2. All cell lines were tested for mycoplasma contamination. No cell lines used in this study were found in the database of commonly misidentified cell lines that are maintained by ICLAC and NCBI BioSample.
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3

Isolation and Culture of Human Immune Cells

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Dulbecco’s modified Eagle’s medium (DMEM), α-Minimum Essential Medium (α-MEM), antibiotic-antimycotic (anti-anti), fetal bovine serum (FBS), and phosphate-buffered saline (PBS) were purchased from the Life Technologies (Grand Island, NY). OxPAPC, CLI-095, and monophosphoryl lipid A (MPLA) were purchased from the Invivogen (San Diego, CA). Fibroblast growth factor-2 (FGF-2) was obtained from the R&D System (Minneapolis, MN). Tryptic soy broth was purchased from the Acumedia (Lansing, MI). Agar was obtained from the Fisher Scientific (Pittsburgh, PA). Human LL-37 ELISA kit was purchased from the Hycult Biotech (Plymouth Meeting, PA). LL-37 peptide was purchased from the AnaSpec (Fremont, CA). GW0742, trypsin IIS, and ampicillin (Amp) were purchased from the Sigma-Aldrich (St. Louis, MO). Collagenase type I was purchased from the Worthington (Lakewood, NJ). 1,25-dihydroxy vitamin D3 was purchased from the Cayman Chemical (Ann Arbor, MI).
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4

Amyloid-β Peptide Preparation and Application

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Powdered Ap 1–42 peptide (American Peptide Company, Sunnyvale, CA) and diluted in dH2O to the concentration of 500 μM, and then, by addition of Ca2+-free artificial cerebrospinal fluid (aCSF) to concentration of 50 μM, then aliquoted and frozen. Single aliquot was sufficient for one experiment, which was then immediately diluted to aCSF containing 10 μM DMSO to the final concentration of 1.0 μM before use. GW0742 for the animal experimentation was kindly provided by GlaxoSmithKline (Research Triangle, NC). For the cell culture studies, GW0742 was purchased from Sigma (Sigma-Aldrich).
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5

PPARγ DNA Binding Assay and Agonist Treatment

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PPARγ DNA binding activity was measured using a PPARγ transcription factor assay kit (Cayman Chemical, USA). Briefly, 10 μg of extracted nuclear proteins were added to wells containing immobilized dsDNA sequences corresponding to the peroxisome proliferator response element. Bound PPARγ was detected by the addition of specific antibodies against PPARγ. Relative PPARγ DNA binding activity was determined by normalizing the measurements obtained for cells transfected with Yulink-shRNA to those obtained for cells treated with Ctrl vector. Rosiglitazone (Santa Cruz), pioglitazone (Sigma), GW7647 (Sigma), and GW0742 (Sigma) were stored in the dark at − 20 °C. Working solutions were prepared by diluting the stock solution in media. Stable cells transfected with Yulink-shRNA or Ctrl vector were treated with or without agonist for 6 h, 12 h, or 2 days. RNA was subsequently isolated from cells using Quick-RNA MiniPrep (Zymo Research, USA), according to the manufacturer’s instructions.
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6

Molecular Mechanisms of PPARβ/δ Regulation

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GW0742 and GSK0660 were purchased from Sigma-Aldrich (St. Lois, MO, USA). Rosiglitazone, GW9662 and Bisphenol A diglycidyl ether (BADGE) are from Cayman Chemical Company (Ann Arbor, MI, USA). 5-bromo-2′deoxyuridine is from Sigma-Aldrich (St. Lois, MO, USA). Anti-PPARβ/δ and anti-Myc were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-PPARγ, anti-GFAP (Glial fibrillary acidic protein), anti-DCX (Doublecortin) and anti-SOX2 are from Cell Signaling Technology (Beverly, MA, USA). Anti-Nestin and anti-EGFR are from Millipore (Billerica, MA, USA), anti-Galactocerebroside C (GalC) was purchased from Sigma-Aldrich (St. Lois, MO, USA), anti-5-bromo-2′deoxyuridine is from Abcam (Cambridge, MA, USA) and anti-β III-Tubulin is from Promega (Madison, WI, USA). Restriction enzymes are all from New England Biolabs (Ipswich, MA, USA). GoTaq Flexi DNA Polymerase and RT-PCR reagents were purchased from Promega (Madison, WI, USA) and Invitrogen (Grand Island, NY, USA). siRNA-PPARβ/δ was purchased from Santa Cruz Biotechonology, siRNA-control and siGlo-Green Transfection Indicator were obtained from Thermo Fisher Scientific, Dharmacon Inc (Lafayette, CO, USA).
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7

Stable Cell Lines Expressing PPAR Agonists

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Stable NGP, SK-N-BE(2), and IMR-32 cell lines were produced that express the enhanced green fluorescent protein (eGFP) or eGFP and the human PPARβ/δ (hPPARβ/δ).9 (link) Expression of eGFP and hPPARβ/δ was verified as previously described.8 (link),9 (link) Cells were treated with or without 0.01–1.0 μM GW0742 (a specific PPARβ/δ agonist30 (link)), 1 μM DG172 (a selective repressive PPARβ/δ ligand31 (link)) or 10 μM atRA; an RAR agonist, Sigma-Aldrich, St. Louis, MO) as described below.
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8

Adipogenic Differentiation Protocol

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Dulbecco's modified Eagle's medium (DMEM) containing low or high glucose levels, fetal bovine serum (FBS), fetal calf serum (FCS), penicillin, and streptomycin were obtained from GIBCO (Grand Island, NY). Antibodies against C/EBPα, PPARγ, and β-actin were from Santa Cruz Biotechnology (Santa Cruz, CA). The RNA extraction kit was from Intron Biotechnology (Seoul, Korea). PPARγ, aP2, CD36, FAS, LPL, and GAPDH oligonucleotide primers were from Bioneer Co. (Daejeon, Korea). Rosiglitazone, pioglitazone, GW0742, GW7647, protein inhibitor cocktail, phenylmethyl sulfonylfluoride, hematoxylin,eosin and all other chemicals were from Sigma (St. Louis, MO). LFE and FSB were isolated from Lysimachia foenum-graecum as previously described [3 (link), 4 (link)].
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9

Ligand-Induced PPARβ/δ Signaling

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The PPARβ/δ ligands GW0742, GSK3787, L−165042 and GSK0660 as well as 1400W, LPS O55:B5, sulfanilamide and naphthylethylenediamine dihydrochloride were purchased from Sigma (Gillingham, Dorset, UK). Sodium nitrate, orthophosphoric acid and DMSO were purchased from Fisher Scientific (Loughborough, UK). Primers from Applied Biosystem (Foster City, CA, USA): β-actin (Rn00667869_m1), Pdk−4 (Rn00585577_m1), Angptl−4 (Rn015228817_m1), Nos2 (Rn00561646_m1).
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10

Molecular Mechanisms of PPAR and SIRT1

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All the reagents, including insulin-transferrin-sodium selenite media supplement (ITS), recombinant human IL-1β, GW0742, nicotinamide, and EX527, were purchased from Sigma Chemical Company. Adenoviruses expressing PPARβ/δ (Ad-PPARβ/δ) and TTA (Ad-TTA) were kindly provided by Professor Nanping Wang of the East China Normal University Health Science Center, Shanghai, China. Adenoviruses expressing SIRT1 (Ad-SIRT1), SIRT1 siRNA (Ad-siSIRT1), and the control adenoviruse (Ad-siControl) were generously provided as gifts by Professor Yongsheng Chang of the Beijing Union Medical College, Beijing, China. Antibodies, including β-actin (Santa Cruz sc-47778, Dallas, TX, USA), COX-1 (Cayman Chemical 160109, Ann Arbor, MI, USA), COX-2 (Cayman Chemical 160106), PPARα (Santa Cruz sc-1982), PPARγ (Santa Cruz sc-1981), PPARβ/δ (Abcam ab8937, Cambridge, UK), and SIRT1 (Abcam ab32441) were used in the present study.
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