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10 protocols using high speed centrifuge

1

Genomic DNA Extraction from Blood

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After conducting laboratory tests, DNA extraction from venous blood was performed. The blood was subjected to a 10-minute centrifugation with anticoagulant ethylenediaminetetraceticacid at 1500 rpm to separate blood cells from plasma using the Eppendorf high-speed centrifuge. Subsequently, DNA was extracted from peripheral leukocytes with a whole-blood genome extraction kit (Kaishuo Biotechnology Corporation, Xiamen, China), following relevant protocols and stored at −80°C before genotyping.
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2

Real-Time PCR and Protein Transfer

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Eco Real-Time PCR system (Illumina, San Diego, CA, USA), high-speed centrifuge, pipettes (range: 2.5 μL to 1000 μL) (Eppendorf, Hamburg, Germany), VE-180 vertical electrophoresis unit, VE-186 Trans-Blot transfer unit (Tanon Science and Technology, Shanghai, China), vortex shaker (model: HYQ-3110; Crystal Technology & Industries, Dallas, Texas, USA), microplate reader (model: ELX800; BioTek Laboratories, Vermont, USA), and ultrasonic cleaner (model: SB-5200DTDN; Scientz, Ningbo, China) were used.
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3

Exploring Molecular Mechanisms of β-elemene

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β-elemene was purchased from LKT Labs Co., Ltd (St. Paul, MN, USA). Erlotinib was obtained from Sigma Co., Ltd (St. Louis, MO, USA). Primary antibodies against p-mTOR (Ser2448), p-EGFR (Tyr1068), p-AMPKα (Thr172), p-Erk1/2 (Thr202/Tyr204), p-AKT (Ser473), t-mTOR, t-EGFR, t-Erk, GAPDH, t-AKT, Bax, CHOP, and PARP were purchased from Cell Signaling Technology (Danvers, MA, USA). Annexin V/PI staining dye was purchased from BD Biosciences (San Jose, CA, USA). Equipment used in this study included flow cytometry (BD Biosciences, USA), spectraMax paradigm multimode microplate reader (Molecular Devices, CA, USA), electrophoresis and transfer film equipment (Bio-Rad, Hercules, CA, USA), and high-speed centrifuge (Eppendorf, Hamburg, Germany). β-elemene and erlotinib were dissolved in dimethyl sulfoxide (DMSO) to various working concentrations when used.
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4

Quantitative Trace Element Analysis in Infant Milk

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The following instruments and reagents were used in this experiment: NexION 300D ICP-MS (PerkinElmer, Waltham, MA, USA) equipped with a concentric nebulizer and collision reaction cell; Series 200 HPLC (Perkin Elmer, Waltham, MA, USA); de-iron water was acquired using a Millipore water purifier (Millipore Ltd., Bedford, MA, USA); Phenomenex Luna 5 μm C18 (250 × 4.6 mm) column; ETH031 Microwave Digestion Instrument (Milestone Co., Roseland, NJ, USA); KQ-500DE Numerical Control Ultrasonic Cleaner (Kunshan Instrument Co., Shanghai, China); high-speed centrifuge (Eppendorf Co., Hamburg, Germany); cobalt standard solution (1000 mg/L) (SPEX Co., Metuchen, NJ, USA); vitamin B12 (Cyanobalamin, Sigma-Aldrich Co., Burlington, MA, USA); infant milk powder standard substances GBW 10277 (NIM, Beijing, China); nitric acid and methanol (chromatographic purity, Merck, Darmstadt, Germany); ethylenediamine tetraacetic acid disodium (EDTA), potassium dihydrogen phosphate, disodium hydrogen phosphate dodecahydrate, potassium ferrocyanide, anhydrous sodium acetate, trichloroacetic acid, zinc acetate, and acetic acid (analytical purity, Chinese Medicine Co., Beijing, China).
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5

Bovine Neutrophil Isolation from Dairy Cows

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The test animals were selected from a sizeable intensive dairy farm in Daqing, Heilongjiang Province, China. Three healthy 2-year-old cows of similar body condition and at mid-lactation were randomly selected. All cows were healthy and did not exhibit any clinical signs of mastitis. Whole blood was collected from the cows via the middle tail vein. Neutrophils were isolated and purified by using the bovine peripheral blood neutrophil purification kit® (Solarbio, Beijing, China). Then, 4 mL Separate A, 2 mL Separate C, and 2 mL sodium citrate anticoagulated whole blood were successively added into a 15 mL centrifuge tube, forming a liquid gradient. The mixture was then centrifuged at room temperature in an Eppendorf high-speed centrifuge at 900× g for 30 min. After the centrifugation step, neutrophils were found in the lower gradient phase as a white ring. Neutrophils were extracted into a new 15 mL centrifuge tube and erythrocytes were lysed with Red Blood Cell Lysis Buffer. Then, the suspensions were centrifuged (300× g, 5 min) and washed three times; neutrophils were resuspended in Roswell Park Memorial Institute (RPMI) 1640 medium (Gibco, Grand Island, NY, USA) containing 10% fetal bovine serum (FBS; Gibco Grand Island, NY, USA).
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6

Extraction and Preservation of Genomic DNA

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Following laboratory tests, this work isolated DNA from venous blood. First, blood samples were centrifuged for 10 min at 1500rpm with the Eppendorf high-speed centrifuge using the anticoagulant ethylene diamine tetra acetic acid (EDTA) to separate blood cells and plasma. After that, DNA was extracted from peripheral leukocytes with the use of a whole-blood genome extraction kit (Xiamen Kaishuo Biotechnology Corporation, China) and related protocols. Finally, the extracted DNA sample was stored at 80 C before genotyping.
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7

Isolation of Bovine Peripheral Blood Neutrophils

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Blood was collected by tail vein puncture under aseptic conditions into a blood collection tube containing sodium citrate, and PMN was isolated using the Solarbio Bovine Peripheral Blood Neutrophil Isolation Kit® (Solarbio, Bejing, China) according to the manufacturer’s instructions. First, 4 mL of Reagent A was added into a 15 mL centrifuge tube, then 2 mL of Reagent C was carefully added onto the surface of Reagent A, and finally, 2 mL of peripheral blood was added into the solution. In order to achieve cell separation, the solution was centrifuged in an Eppendorf high-speed centrifuge at 900× g for 30 min (Eppendorf, Hamburg, Germany). The granule cell layer was aspirated, added with RPMI 1640 medium, and washed 3 times by centrifugation at 500× g for 5 min. Trypan blue staining was used to determine cell death with the number of trypan-blue-positive and trypan-blue- negative PMN counted by an automatic cell counter, and its concentration was adjusted to 1 × 106 cells/mL.
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8

Comprehensive Analytical Workflow for Compound Characterization

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All the instrumentation used in this experiment included a double single-side purification workbench (Shanghai Shuo Guang Electronic Technology Corporation, Shanghai, China), Intelligent Biochemical Incubator (Shanghai Shuo Guang Electronic Technology Corporation, Shanghai, China), autoclave (Panasonic Healthcare Corporation, Tokyo, Japan), high-speed centrifuge (Eppendorf, Hamburg, Germany), Large-Capacity Combined Shock Incubator (Shanghai Minquan Instrument Corporation, Shanghai, China), FLEXA Purification System (Tianjin, China, Agela Technologies), Rotary Evaporator (Ningbo Hangjing Biotechnology Corporation, Ningbo, China), Waters Xevo G2-XS Q-Tof mass spectrometer (Waters Corporation, Milford, MA, USA), Agilent HPLC 1260 Infinity instrument (Agilent Technologies Inc., Santa Clara, CA, USA), and 600 MHz Bruker AVANCE NEO spectrometer (Bruker, Karlsruhe, Germany).
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9

Polyphenol Extraction from Fruits and Vegetables

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Fruit and vegetable samples were treated according to their water content. If the water content was >30% of fresh weight, fruits and vegetables were homogenized with a homogenizer. The homogenates were centrifuged for 15 min at 2000× g, in a laboratory centrifuge (Heraeus), and the clear supernatant was used for analysis. With insufficient phase separation, turbid supernatants were centrifuged at 8000× g for 4 min, in a high-speed centrifuge (Eppendorf, Hamburg, Germany), and the clear supernatants were analysed for polyphenols.
Fruits and vegetables with low water content (<30%) were weighed, and distilled water was added to the weight (mL/g) before homogenization, e.g., if a sample weighed 5.6 g, we added 5.6 mL of distilled water. For dry samples (e.g., flour), we added the 10-fold amount of water. The remaining procedure was as described before.
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10

Quantitative Proteome Analysis of Cells

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The following instruments were used: a high-speed centrifuge (Eppendorf); a C18 desalting column: Strata X C18 (Phenomenex); an e2695/2998 high-performance liquid chromatography (HPLC) system (Waters); a Bridge Peptide BEH C18 (130 Å, 3.5 µm, 4.6*250 mm) high-pH C18 RP column (Waters); a NanoLC 1000 nanoscale HPLC system (Thermo); and a Q Exactive (Thermo, Massachusetts, USA) for combined mass spectrometry. Urea, ethylenediaminetetraacetic acid (EDTA), dithiothreitol (DTT), etc., were used for protein extraction. A Bradford assay kit (Biyuntian) was used for protein quantification. DTT, iodoacetamide (IAM), trypsin and trypsin spin columns were used for enzymatic labelling. The iTRAQ8plex® Reagent Kit (AB Sciex, Boston, USA) was used. Unless otherwise specified, the biochemical reagents used in this study were purchased from Sigma.
1.6 Method
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