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6 protocols using amersham hybond c extra

1

Western Blot Analysis of Protein Targets

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Cells or small tissue slices were lysed on ice in RIPA buffer (50 mM HEPES, 10 mM NaCl2, 1% NP-40, 0.1% SDS and 1% Triton X-100) supplemented with cOmplete Protease Inhibitor Cocktail Tablets and PhosSTOP Phosphatase Inhibitor Cocktail Tablets (Roche, Mannheim, Germany) and 30 μg of the resulting proteins were separated on 10% SDS-PAGE then transferred to Amersham Hybond-C Extra (GE Healthcare, Solingen, Germany) membranes. Membranes were blocked in 5% milk powder in TBS-T0.1 then incubated with primary antibodies against Brd4 (1:200; #sc48772; Santa Cruz, Heidelberg, Germany), E2f1 (1:1000; #AF4825; R&D Systems, Minneapolis, MN, USA) or MYCN (1:1000; #9405; Cell Signaling, Frankfurt am Main, Germany) and Actin (1:2,000; #A3853; Sigma-Aldrich, Taufkirchen, Germany) or Gapdh (1:2000; #MAB374; Millipore, Darmstadt, Germany) as a loading control. After washing twice with TBS-T0.1, membranes were incubated 1h at room temperature with horseradish peroxidase-conjugated secondary antibodies against mouse IgG (1:2000; #NA9310V; GE Healthcare), rabbit-IgG (1:2000; #NA9340V; GE Healthcare) or sheep IgG (1:2000; #HAF016; R&D Systems). Protein detection and visualization were performed as described previously.30 (link)
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2

RITA Modulates p53-MDM2 Axis Proteins

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Protein lysates were extracted from cells treated with 1 μM RITA for 24, 48, and 72 h, lysed 30 min on ice in radioimmunoprecipitation assay (RIPA) Buffer supplemented with Complete Protease Inhibitor Cocktail Tablets and PhosSTOP Phosphatase Inhibitor Cocktail Tablets (Roche). 50 μg proteins were separated on 10% SDS-PAGE then transferred to Amersham-Hybond™-C Extra (GE Healthcare) membranes. Transferred membranes were blocked in 5% milk powder in Tris-buffered saline and Tween 20 and then incubated for 12 to 24 h, using the following antibodies and dilutions: CDKN1A (1:500, cat ab-7960, Abcam), TP53 (1:500, cat#sc-71817, Santa Cruz Biotechnology), MDM2 (1:1000, IF2, cat#33-7100, Life Technologies), beta-actin (1:2000, cat#A5541, Sigma-Aldrich), GAPDH (1:2000, cat#MAB374, Merck Millipore), and HRP-conjugated anti-rabbit IgG (1:2000; GE Healthcare) or HRP-conjugated anti-mouse IgG (1:2000; GE Healtcare) was added for 1 h at room temperature. Proteins were visualized using Amersham ECL Plus™ western blotting detection reagents (GE Healthcare) and the UVchem Detection Device (Biometra).
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3

Western Blot Analysis of Transfected Cells

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Transfected cells were collected posttransfection and washed twice in Dulbecco's phosphate buffered saline (dPBS). Cells were lysed directly in 25 μl dPBS and 25 μl sample buffer (120 mM Tris-HCl [pH 6.8], 5% SDS, 10% 2-mercaptoethanol, 20% glycerol, 0.01% bromophenol blue), boiled for 10 minutes and separated by SDS-PAGE electrophoresis. Proteins were transferred to nitrocellulose membranes (Amersham Hybond-C Extra; GE Healthcare) and detected with the corresponding primary and secondary antibodies. The following primary antibodies were used; cyclin A (H-432) (sc-751; Santa Cruz), actin (I-19) (sc-1616; Santa Cruz), GFP (ab6556; Abcam), MNV-1 anti-NS1-2 [13 ] and MNV-1 anti-NS5 [13 ]. Secondary antibodies used were 680RD donkey anti-goat IgG (926–68074; LI-COR) and 800CW donkey anti-rabbit IgG (926–32213; LI-COR).
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4

Quantification of 5-LO Protein Expression

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MM6 cells were seeded at a density of 2 × 105 cells/ml and incubated for 24 hours without or with 50 nM calcitriol, 1 ng/ml TGFβ and with the indicated inhibitors. Whole cell lysates were then separated by SDS-PAGE and were transferred to nitrocellulose membranes (Amersham Hybond™-C Extra, GE Healthcare, Freiburg, Germany). After 1 hour blocking, the membranes were incubated with the appropriate primary antibody against 5-LO (BD Biosciences, Heidelberg, Germany: 610695) and β-actin (Santa Cruz: sc-1616) overnight at 4°C. The membranes were washed with PBS/0.1%-Tween-20 and were incubated with infrared-dye conjugated secondary antibodies (LI-COR Biosciences, Bad Homburg, Germany) for 45 minutes at room temperature. Detection of the protein signals was performed with the Odyssey® Infrared Imaging System (LI-COR Biosciences).
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5

Western Blot Analysis of Apoptosis Markers

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The protocol was similar to that described by Oliveira et al. [47 (link)] with modifications. The protein content of the cell lysate was determined by a bicinchoninic acid (BCA) protein assay reagent kit (Thermo Fisher Scientific Inc., Waltham, MA, EUA) according to the manufacturer’s protocol. For the Western blot analysis, protein samples (20 μg of protein) were mixed with Laemmli buffer (Bio-Rad Laboratories, Hercules, CA, USA) and subjected to SDS-PAGE (10%). The proteins were transferred onto a nitrocellulose membrane (Amersham Hybond-C extra; GE Healthcare, Chicago, IL, USA) and stained with Ponceau S to assess the efficacy of the transfer. The membranes were incubated with primary antibody overnight with agitation at 4 °C and subsequently with secondary rabbit horseradish peroxidase antibodies (Cell Signaling Technology, Danvers, MA, EUA) for 1 h at room temperature. The following primary and secondary antibody combinations were used for the respective proteins: anti-Caspase 3, anti-JNK, anti-phospho-JNK, anti-JAK2, anti-STAT3, and anti-phospho-STAT3. These antibodies and HRP-conjugated anti-rabbit IgG were obtained from Cell Signaling Technology (Danvers, MA, USA), and anti-β-actin was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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6

Quantitative Western Blot Protein Analysis

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The protein content of the cell lysate was determined by a bicinchoninic acid (BCA) protein assay reagent kit (Thermo Fisher Scientific, MA, USA) according to the manufacturer’s protocol. Before the Western blot analysis, protein samples (20 μg) were subjected to SDS-PAGE and stained with Laemmli buffer to ensure equal loading of the proteins. Proteins were transferred onto a nitrocellulose membrane (Amersham Hybond-C extra; GE Healthcare, Chicago, IL, USA). The membranes were incubated overnight at 4 °C with primary antibodies and subsequently with secondary rabbit horseradish peroxidase antibodies for 1 h at room temperature. The following primary and secondary antibody combinations were used for the proteins: caspase 3, caspase 9, Bax, Bcl-2 and HRP-conjugated anti-rabbit IgG were obtained from Cell Signaling Technology (Beverly, MA, USA) and β-actin was purchased from Merck/Sigma-Aldrich (Merck KGaA, Darmstadt, Germany).
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