The largest database of trusted experimental protocols

4 protocols using tcs sp8 sted cw

1

Detecting Hydroxyl Radicals in MCF-7 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MCF‐7 cells were seeded in a six‐well plate at a density of 3 × 105 cells/well and cultured for 24 h at 37°C with 5% CO2. Subsequently, a d‐pen solution (666 μM), a suspension of NH2‐MIL‐101(Fe) (900 μg/ml), or a suspension of NH2‐MIL‐101(Fe)/d‐pen (1000 μg/ml) containing an equivalent amount of d‐pen and NH2‐MIL‐101(Fe) was added to each well and incubated for 6 h. Afterward, the cells were washed with fresh medium and incubated with 2 ml of 10 μM of DCFH‐DA for 30 min. DCFH‐DA was employed as a fluorescent probe for OH detection, as it produced fluorescent 2′‐7′‐dichlorofluorescein (DCF) when reacted with OH.43 Thus, the treated cells were examined under a confocal microscope (CLSM; TCS SP8 STED CW, Leica Microsystems, Wetzlar, Germany) at excitation and emission wavelengths of 488 and 530 nm, respectively. To examine the effect of concentration, the experiments described above were repeated with a suspension of 500 μg/ml NH2‐MIL‐101(Fe)/d‐pen, containing an equivalent amount of 333 μM d‐pen.
+ Open protocol
+ Expand
2

Visualizing Receptor Mobility and Clustering

Check if the same lab product or an alternative is used in the 5 most similar protocols
FRAP was performed on a laser scanning confocal microscope (TCS SP8 STED CW; Leica Microsystems) to i) assess the mobility of ligands in lipid bilayers and ii) to visualise the recovery of TIGIT and CD155 molecules within clusters. Mobility of ligands in PLBs or BSLBs was assessed using Streptavidin or ligand directly conjugated to Alexa-Fluor 647. Briefly, 1 μg/mL of either protein was loaded into bilayers, washed as described above and imaged using the 100× oil objective (NA, 1.4). 5 μm × 5 μm regions were bleached with 100% 660 nm STED laser and imaged every second for 60–90 s with the WLL set at 650 nm. Mobility could then be assessed by plotting the recovery within the bleached region over time, compared to adjacent 5 μm × 5 μm regions that had not been bleached. We routinely observe 100% recovery with T1/2 ~ 5 s. To assess TIGIT and CD155 clusters in cells on PLBs, the same setup was used, except that TIGIT-GFP was imaged and bleached using the WLL at 488 nm, and CD155-AF647 imaged and bleached with the WLL at 650 nm, in defined ROIs that covered the entirety of a visible cluster. Recovery was then assessed by normalising recovery to clusters of similar intensity that were not bleached.
+ Open protocol
+ Expand
3

Characterization of Lymphoid Organ Structures

Check if the same lab product or an alternative is used in the 5 most similar protocols
dLNs were harvested and fixed in Antigenfix (Diapath) for 1.5 h, washed with PBS, and then dehydrated in 30% sucrose prior to embedding in optimal cutting temperature compound freezing media (Bio-Optica). 20 μm sections were cut on a CM1520 cryostat (Leica) and adhered to Superfrost Plus slides (Thermo Fisher Scientific). Sections were then blocked in PBS containing 0.3% Triton X-100 (Sigma-Aldrich) and 0.5% BSA followed by incubation with Fc block in the same blocking buffer. The following primary antibodies were used for staining: BV421-conjugated anti-CD45R/B220 (RA3-6B2; BioLegend), AF488-conjugated anti-CD45.2 (104; BioLegend), biotinylated anti-LYVE-1 (ALY7; eBiosciences), BV421-conjugated anti-TCRβ (H57-597; BioLegend), and biotinylated CD21/35 (7E9; BioLegend). The following secondary antibodies were used for staining: Streptavidin, Alexa Fluor 555, or Alexa Fluor 647 Conjugate (Invitrogen). Images were acquired on an inverted Leica microscope (TCS STED CW SP8; Leica Microsystems). A motorized stage was used for tiled imaging. Image analysis was performed using Imaris Microscopy Image Analysis Software (Version9.1.2; Oxford Instruments).
+ Open protocol
+ Expand
4

Multicolor Immunofluorescence Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin sections (30 μm) were cut on a HM355S microtome (Thermo Fisher Scientific) and allowed to adhere to Superfrost Plus slides (Thermo Fisher Scientific). Sections were permeabilized and blocked in PBS containing 0.3% Triton X-100 (Sigma-Aldrich) and 10% FBS followed by staining in the same blocking buffer. The following primary antibodies were used for staining: goat anti-mouse CD31 (1:100, R&D Systems); rabbit anti-mouse LYVE1 (1:200, Novus Biologicals); rabbit anti-cKit (CD117) (1:100, Abcam). The following secondary antibodies were used for staining: Alexa Fluor 647 donkey anti-rabbit IgG (H+L), Alexa Fluor 568 donkey anti-goat IgG (H+L) (Thermo Fisher Scientific). Rabbit anti-mouse Glutamine Synthetase (AbCam) was directly conjugated with Zenon Alexa Fluor 488 Rabbit-IgG.
Stained slides were mounted with Fluorescence Mounting Medium (Agilent Dako) and images were acquired on an inverted Leica microscope (TCS STED CW SP8, Leica Microsystems) with a motorized stage for tiled imaging. To minimize fluorophore spectral spillover, we used the Leica sequential laser excitation and detection modality. The bleed-through among sequential fluorophore emission was removed applying simple compensation correction algorithms to the acquired images. Lif files were imported into Imaris (Bitplane) for background adjustment and exported as tiff images.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!