The largest database of trusted experimental protocols

30 protocols using csu x1

1

Fluorescent Imaging of Pupae and Live Cell Ablation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pupae were imaged whole with a Leica Fluorescence Stereo Microscope and Leica Application Suite X (LasX, Version 3.5.2.18963).
Confocal fluorescent images were taken with a Leica TCS SP8 with an HC PL APO CS2 63×/1.4 oil objective and Leica Application Suite X (LasX, Version 3.5.2.18963). Live imaging of macrophage cultures was performed using a Zeiss CellObserver Z.1 with a Yokogawa CSU-X1 spinning disk scanning unit and an Axiocam MRm CCD camera (6.45 µm×6.45 µm) and ZenBlue 2.5 software. Ablation experiments were performed using the UV ablation system DL-355/14 from Rapp OptoElectronics, as reported previously (Lehne et al., 2022 (link)).
+ Open protocol
+ Expand
2

Multimodal Imaging of Cellular Processes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Structure illumination microscopy images were taken with an ELYRA S.1 microscope (Cell Observer SD, 63×/1.4 oil-immersion objective). Confocal fluorescence images were taken using a Leica TCS SP8 with an HC PL APO CS2 63×/1.4 oil objective. Live imaging of macrophage cultures was performed using a Zeiss CellObserver Z.1 with a Yokogawa CSU-X1 spinning disc scanning unit and an Axiocam MRm CCD camera (6.45 µm×6.45 µm). Ablation experiments were done using a 355 nm pulsed UV laser (Rapp, Optoelectronics), as reported previously (Sander et al., 2013 (link); Rüder et al., 2018 (link)).
+ Open protocol
+ Expand
3

Multimodal Microscopic Imaging of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Confocal images were taken with a Leica TCS SP8 with an HC PL APO CS2 ×63/1.4 oil objective and Leica Application Suite X (LasX) software. Structure illumination microscopic images were taken with a Zeiss ELYRA PS1 Microscope with a ×63/1.4 oil objective. Live imaging of macrophages was performed using a Zeiss CellObserver Z.1 with a Yokogawa CSU-X1 spinning disk scanning unit and an Axiocam MRm CCD camera (6.45 µm × 6.45 µm) and ZenBlue 2.5 software. Laser ablation of single cells was done using the UV laser ablation system DL-355/14 from Rapp OptoElectronics. Imaging of fixed B16-F1 cells was performed with an Olympus XI-81 inverted microscope equipped with an UPlan FI ×100/1.30NA oil immersion objective or a Zeiss LSM980 confocal microscope equipped with a Plan-Neofluar ×63/1.45NA oil immersion objective using 488 nm and 561 nm laser lines. Fluorescence intensities of phalloidin-stained lamellipodia were quantified from 8-bit images captured at identical settings using ImageJ software after background subtraction. Relative mean pixel intensities in lamellipodial regions of interest are shown as whiskers-box plots including all data points. The numbers of microspikes were manually counted.
+ Open protocol
+ Expand
4

Live Imaging of Drosophila Larval Salivary Glands

Check if the same lab product or an alternative is used in the 5 most similar protocols
Live imaging of larval salivary glands was performed as previously reported (Tran et al., 2015 (link)). In short, naturally secreting isolated glands were placed in a glass-bottom imaging dish, covered with a Isopore 0.1 µm PC membrane (Merck) and 50 µl Schneider's Drosophila medium. For long-term imaging, the imaging chamber was humidified with a wet tissue paper and sealed with parafilm to prevent evaporation. Dissected glands were imaged with a Zeiss CellObserver Z.1 with a Yokogawa CSU-X1 spinning disc scanning unit and an Axiocam MRm CCD camera (6.45 µm×6.45 µm). For additional Dextran imaging, dissected glands were incubated for 1 h with 200 µM Dextran-Alexa568 (molecular mass 10,000, Invitrogen) in Schneider's Drosophila medium, washed three times with medium and then placed on an imaging chamber as described above.
+ Open protocol
+ Expand
5

Pupal Abdominal Wound Closure Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single epithelial cells of 18–20 h APF pupal abdomen were ablated using the UV laser ablation system DL-355/14 from Rapp OptoElectronics and wound closure was observed for 1 h every 30 s on a Zeiss CellObserver Z.1 with a Yokogawa CSU-X1 spinning disk scanning unit and an Axiocam MRm CCD camera (6.45 µm × 6.45 µm). Wound closure was analyzed by measuring the wound size in 5 min increments using freehand selections in Image J.
+ Open protocol
+ Expand
6

Imaging Testis Development in Drosophila

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fixed pupal testes were embedded in Fluoromount-G (SouthernBiotech) and imaged on object slides. Adult testes were imaged in live-culture dishes in PBS, to maintain their natural shape. Light micrographs were taken with a Leica M165 FC stereo microscope equipped with a Leica DFC7000 T CCD camera. All fluorescent microscopic stills were taken with a Leica TCS SP8 with a HC PL APO CS2 20x/0.75 dry objective. 4D live cell imaging was performed on developing testes of 33 h APF pupae. Prepupae were collected and timed as described elsewhere 30 (link) . Life imaging of pupal testes was performed like on egg chambers, as described before 62 (link) . Images were taken on a Zeiss Observer.Z1 with a Yokogawa CSU-X1 spinning disc scanning unit and an Axiocam MRm CCD camera (6.45 µm x 6.45 µm). Long-term imaging was performed using a LD LCI Plan-Apochromat 25x/0.8 Imm Korr DIC oil-immersion objective over 7 h, with a z-stack every 5 min. Close-ups were taken with a C Plan-Apochromat 63x/1.4 oil-immersion objective over 2 h, with a z-stack every 2 min.
Laser ablation of single cells on the testis was performed with a Rapp TB 355 laser.
+ Open protocol
+ Expand
7

Imaging and Tracking Microtubule Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were transfected with GFP-EB1ΔC-2xEGFP encoding plasmid using FuGENE 6 Transfection Reagents (Promega Corporation), according to the manufacturer’s instructions. The construct was a generous gift from Dr. T. Wittmann (University of California, San Francisco, CA) (20 (link)). The cells with physiologic levels of GFP-EB1 expression were imaged 48 hours post-transfection using Yokagawa CSU-X1 spinning disk confocal microscope under a 100× objective (Zeiss). For each cell, hundreds of GFP-EB1–labeled individual microtubule tips were imaged. Images were acquired every second for 3 minutes for a total of 180 time-lapse images per cell; approximately 10–20 representative cells per condition. Image analysis was performed using the MATLAB-based plusTipTracker algorithm, as described previously (21 (link)). The following parameters were used: search radius 5–10 pixels, max gap length 12, max shrinkage 1.0, max angle forward 25, max angle backward 10, and fluctuation radius 2. All parameters were calculated per cell; for each cell line, 10 videos containing one or two cells were acquired. Mann–Whitney test was used to calculate any statistical difference in the mean parameter values.
+ Open protocol
+ Expand
8

Multimodal Microscopic Imaging of Zebrafish

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount images were acquired with a Leica MZFL III binocular microscope coupled to an Olympus DP 71 CCD camera and Olympus cellSense software. Bright-field images were obtained with an Olympus BX51 Microscope and Olympus cellSense software. Confocal images were acquired with a Nikon A1R confocal microscope. For in vivo confocal imaging, zebrafish embryos and larvae were mounted and anaesthetized in 1% low-melting agarose (Sigma-Aldrich, A9414) containing 0.2% (w/v) tricaine on glass-bottom dishes. Z-plane images were obtained with a spinning disc confocal microscope (Zeiss, CSU-X1 Yokogawa) fitted with a 40× [1.1 numerical aperture (NA)] water immersion objective. The optical section thickness was 1 μm. Three nonconsecutive single-plane images per larvae were taken using a Zeiss LSM780 confocal microscope and a 40× (1.1 NA) water immersion objective. Confocal data were processed with ZEN 2012 software (black edition), and images were analyzed with ImageJ.
+ Open protocol
+ Expand
9

Fluorescence Imaging Protocols for Cell Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images of fixed and stained samples were recorded with a confocal microscope (Zeiss LSM780, 25×/NA0.8, 40×/NA1.2/water and 63×/NA1.4). We separately recorded each color channel. For life imaging, movies with differential interference contrast (DIC) optics were recorded with a light intensity of 2.5–3.0 V, an exposure time of 80–100 ms and a frame rate of 1 image per 0.5–1 min. Fluorescent movies were recorded at an inverted spinning disc microscope (Zeiss, CSU-X1, 25×/NA0.5, 63×/NA1.3/water) with 30–50% laser intensity, 100 ms exposure time and a frame rate of 1 image per 0.5–1 min.
+ Open protocol
+ Expand
10

Imaging Embryonic Development Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescent images of fixed and immunostained embryos were recorded with a confocal microscope (Zeiss LSM780, 25 × /NA0.8 and 40 × /NA1.2). For live imaging, embryos were dechorionated with hypochlorite for 90 sec, washed and lined up on a piece of apple juice agar, transferred to a coverslip coated with glue (“Tesa pack” tape dissolved in heptane), desiccated if necessary, and covered with halocarbon oil (Voltalef 10S). Time-lapse imaging of embryos was conducted on an inverted microscope with differential interference contrast optics (AxioCam camera) or with fluorescent optics and a spinning disc (Zeiss ObserverZ1, CSU-X1, AxioCam MRm, 25 × /NA0.5, 40 × /NA1.3, and 63 × /NA1.3). Images were processed with ImageJ/Fiji and Photoshop (Adobe).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!