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Xf media

Manufactured by Agilent Technologies
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XF media is a specialized culture medium developed by Agilent Technologies for use in their Seahorse XF Analyzers. It is designed to support the measurement of various cellular metabolic parameters, including oxygen consumption rate and extracellular acidification rate, in a controlled and standardized in vitro environment.

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19 protocols using xf media

1

Metabolic Profiling of T Cell Subsets

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Oxygen consumption rates (OCR) and extracellular acidification rates (ECAR) were measured using an XFe24 Extracellular Flux Analyzer (Seahorse Bioscience). Before analysis, human CD4+ T cells enriched from PBMC and murine Th17 cells differentiated from naive CD4+ T cells were counted. OCR was measured using the mitochondria stress test protocol. Cells were resuspended in XF media (Seahorse Biosciences) supplemented with 10 mM glucose (Sigma‐Aldrich), 1 mM GlutaMAX (GIBCO), and 1 mM sodium pyruvate (Corning). OCR was measured under basal conditions and upon treatment with the following reagents: the ATP synthase inhibitor oligomycin (1 μM); the protonophore carbonyl cyanide‐4‐(trifluoromethoxy)phenylhydrazone (FCCP) (1.5 μM) to uncouple mitochondria; the mitochondrial complex I inhibitor rotenone (100 nM); and the mitochondrial complex III inhibitor antimycin A (1 μM). For ECAR measurements, cells were resuspended in XF media (Seahorse Biosciences) supplemented with 1 mM GlutaMAX (GIBCO) and 1 mM sodium pyruvate (Corning). ECAR was measured under basal conditions and upon addition of the following reagents: glucose (25 mM); oligomycin (5 μM); and 2‐DG (100 mM) to block glycolysis. Different OXPHOS and glycolysis parameters were calculated as described previously (Vaeth et al, 2017a).
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2

Mitochondrial Respiration Profiling

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Oxygen consumption rate (OCR) was measured using Seahorse XF96 Analyzers (Agilent, Santa Clara, CA, USA) according to the manufacturer’s protocol. Prior to the start of the experiment, cells were seeded (8000 cells/well) into the XF96 cell culture plate and allowed to adhere for 24 h. Cell culture media were replaced with XF media (Seahorse Bioscience, North Billerica, MA, USA) supplemented with 2 mmol/L Glutamax, 1 mmol/L sodium pyruvate, and 25 mmol/L glucose and were incubated for 1 h in a 37 °C CO2 incubator. Following the establishment of a basal OCR reading, the following pharmacological manipulators of mitochondrial respiratory chain proteins were injected sequentially: (i) oligomycin (1 μmol/L) at ATP synthase inhibitor; (ii) carbonyl cyanide-4-(trifluoromethoxy) phenyl hydrazone (FCCP) (1.5 μmol/L), as a mitochondrial uncoupler; followed by (iii) antimycin A (10 μmol/L), as a complex III inhibitor. The results were calculated using the Seahorse XF Mito Stress Test Report Generator (Seahorse Bioscience, North Billerica, MA, USA).
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3

Measurement of Cellular Metabolism

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Oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) assays were performed as previously described (Zhang et al., 2012 (link)). hPSCs were plated onto an XF24 microplate (Seahorse Bioscience) at 105 cells/well or 106 cells/well with 10 μM Y-27632 (BioPioneer). The next day, 1h prior to the assay, the medium was changed to XF Media (Seahorse Bioscience) supplemented 17.5 mM glucose. Cell metabolic rates were measured using an XF24 Extracellular Flux Analyzer (Seahorse Bioscience). Basal respiration was determined by quantifying OCR prior to and after the addition of 1 μM rotenone (Sigma) and 1 μM antimycin A (Sigma).
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4

Mitochondrial Respiration Profiling of T Cells

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Oxygen consumption rate (OCR) and extraellular acidification rate (ECAR) were measured using the Seahorse XFe bioanalyser. 1.5x105 T cells per well (> 3 wells per sample) were spun onto poly-D-lysine coated seahorse 96 well plates and preincubated in Seahorse XF media (non-buffered RMPI + 10 μM L-glutamine + 10 μM sodium pyruvate + 25 mM glucose) at 37°C for a minimum of 30 min in the absence of CO2. OCR and ECAR were measured under basal conditions, and after the addition of the following drugs: 1 μM oligomycin, 1.5 μM flurorcarbonyl cyanide phenylhydrazone (FCCP) and 100 nM rotenone + 1μM antimycin A as indicated. Measurements were taken using a 96 well Extracellular Flux Analyzer (Seahorse bioscience).
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5

T Cell Metabolic Profiling in BMT

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OCR and ECAR values were measured using a Seahorse XF24 metabolic analyzer. Briefly, donor T cells were purified from B6 into F1 recipients on day 7 post-BMT using bead-based negative selection. Cell suspensions were pretreated with 100 µM Etomoxir (or PBS control) for 15 minutes followed by plating unto XF24 plates (Seahorse Bioscience) coated with 0.5 mg/ml poly-D lysine (Sigma). 7–8×105 cells per well were plated on XF24 plate (Seahorse Bioscience) pre-coated with 0.5 mg/ml poly-D lysine (Sigma). Cells were maintained in XF media (Seahorse Bioscience) supplemented with 1mM sodium pyruvate (Sigma), 11mM glucose (Sigma), and 1% FBS. 100ul of cells were spun down unto poly-D lysine coated plates and 530ul of XF media was added to each well, followed by incubation for 30 minutes in CO2-free incubator at 37°C. Seahorse analyzer was then run per manufacture’s protocol with oligomycin (1uM), FCCP (1uM), and antimycin A (1uM) injected through ports A, B, and C respectively.
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6

Mitochondrial Respiration Profiling

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Oxygen consumption rates (OCR) and extracellular acidification rates (ECAR) were measured using an XFe24 Extracellular Flux Analyzer (Seahorse Bioscience). Before experiments, cells were resuspended in XF media (Seahorse Biosciences) supplemented with 10 mM glucose (Sigma Aldrich), 1 mM GlutaMAX (Gibco) and 1 mM sodium pyruvate (Corning) and analyzed under basal conditions and following treatment with the following agents: the ATP synthase inhibitor oligomycin (1 μM); the protonophore Carbonyl cyanide-4-(trifluoromethoxy)phenylhydrazone (FCCP) (0.75 μM) to uncouple mitochondria; the mitochondrial complex I inhibitor rotenone (100 nM) and the mitochondrial complex III inhibitor antimycin A ( 1 μM). The basal oxygen consumption rate (OCR) was calculated by subtracting the OCR after rotenone and antimycin A treatment from the OCR before oligomycin treatment. The maximal OCR was calculated by subtracting the OCR after rotenone and antimycin A treatment from the OCR measured after addition of FCCP.
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7

Mitochondrial Respiration Profiling

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Oxygen consumption rate (OCR) of 20,000 cardiomyocytes was measured in Seahorse XF media supplemented with 1 mM pyruvate and 4.5 g/l glucose with a XF96 Extracellular Flux Analyzer (Seahorse Bioscience, Billerica, MA, USA). Measurements were performed at basal levels, after the administration of 3 μM oligomycin, 1 μM FCCP, and 2 μM rotenone plus 1 μM antimycin A. Measurements were carried out in triplicate. Isolated cardiac, liver, or kidney mitochondria were loaded at a density of 5 μg/well into the XF 96‐well cell culture microplate by centrifugation at 20,000 × g for 20 min. Baseline respiration was measured at 37°C in MAS buffer (70 mM sucrose, 220 mM mannitol, 2 mM HEPES, 10 mM KH2PO4, 5 mM MgCl2, 1 mM EGTA, 0.2% BSA). Periodic measurements of oxygen consumption were performed after the administration of 10 mM succinate 4 mM ADP, 2 μM rotenone or 2 mM malate, 10 mM pyruvate, or 0.2 mM TMPD, 10 mM ascorbate, 4 μM antimycin A. Final measurements were performed after the administration of 2 μM antimycin A and 2 μM rotenone. Measurements were performed in eight technical replicates and repeated with the mitochondria from different mice in independent experiments.
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8

Mitochondrial and Glycolytic Activity

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The Seahorse XF96 Extracellular Flux Analyzer (Seahorse Bioscience, North Billerica, MA) was used to assess real-time oxygen consumption rate (OCR), an indicator of mitochondrial respiration, and extracellular acidification rate (ECAR), an indicator of net proton loss during glycolysis in NQO1+ and NQO1− 231 cell lines upon IB-DNQ treatment. Before the start of the experiment, the cells were evenly seeded (3000 cells/well) into the 96-well XF96 cell culture plate and allowed to attach for 24 h. A calibration plate was also prepared according to the manufacturer’s instructions by placing it in a non-CO2 37 °C incubator. After prior washing with XF media, cell culture media was replaced with XF media (Seahorse Bioscience), lacking sodium bicarbonate and FBS. The cells were placed in a non-CO2 37 °C incubator for 1 h before starting the experiment. Following the establishment of a basal OCR reading, OCR and ECAR were measured with IB-DNQ addition. OCR and ECAR readings were normalized to total protein levels (BCA protein assay, Pierce) in each well. Each cell line was represented in six wells per experiment, and replicate experiments were carried out at least three times.
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9

Extracellular Flux Analysis of Glycolysis

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ECAR, a measurement of lactate production, was determined upon re-addition of glucose using an extracellular flux analyzer (XF96, Seahorse Bioscience), as described in the manufacturer’s instructions. Briefly, cells were seeded in the detection plate at a density of 2.5 to 3X104 cells per well, incubated with XF media (Seahorse Bioscience) lacking glucose for 12 h and monitored under basal conditions with no added glucose or glutamine and in response to 10 mM glucose, 10 μM oligomycin (Seahorse Bioscience), and 100 μM 2-DG (Sigma-Aldrich). ECAR values were normalized to the number of cells. Glycolytic capacity was defined as the difference between ECAR following the injection of oligomycin and the basal ECAR reading. Glycolytic reserve was defined as the difference in ECAR between the glucose and oligomycin injections.
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10

Measuring Macrophage Oxygen Consumption

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A total of 1 × 105 THP-1 macrophages were seeded per well in XFp cell culture microplates. Oxygen consumption rates (OCR) were measured in Seahorse XF media containing 10 mM glucose, 2 mM GlutaMax, pH 7.4 using a Seahorse XFp Analyzer.
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