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9 protocols using rabbit anti mouse igg

1

ELISA for Isotype Determination of Anti-Meningococcal LOS Antibodies

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For determination of isotypes, wells of microtitration plate (Lynbro/Titertek) were coated with N. meningitidis strain L7 LOS in 0.05 M carbonate buffer pH 9.6 (2 μg/100 μl/well) at 37 °C for 3 h and then at 4 °C overnight. The plate was then blocked with 1% BSA in T-TBS (250 μl/well) at room temperature for 1 h. After threefold washing with T-TBS (250 μl/well), the plate was incubated for 2.5 h at room temperature with murine antisera (100 μl/well) diluted 1:100 with PBS. The plate was then washed five times with T-TBS (250 μl/well), followed by incubating for 1 h at room temperature with rabbit anti-mouse IgG (Bio-Rad, USA) subclass (IgG1, IgG2a, IgG2b, IgG3, IgM, IgA) specific antiserum (100 μl/well). After washing with T-TBS, 100 μl of 1:3000 dilution with PBS of a horseradish peroxidase-labeled goat anti-rabbit IgG (H + L chains, Kirkegaard & Perry Laboratories, USA) was added to each well. Following the incubation for 1 h at room temperature the plate was washed with T-TBS and TMB peroxidase substrate (Kirkegaard & Perry Laboratories) was added (100 μl/well). The reaction was developed at room temperature and stopped with 1 M H3PO4 (50 μl/well). Optical densities were measured at 450 nm using Dynatech MR 5000 microplate reader.
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2

NSCLC Cell Culture and Signaling Pathway Analysis

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The human NSCLC H1299, H358, H1975 and Calu-3 cell lines were provided by American Type Culture Collection (ATCC, Manassas, VA, USA) and maintained in RPMI 1640 (Sigma-Aldrich) medium supplemented with 10% fetal bovine serum (FBS; Life Technologies, Gaithersburg, MD) in a humidified atmosphere with 5% CO2. The identity of all cell lines was confirmed by STR profiling (Promega) on an ad hoc basis prior to performing experiments, and repeated after the majority of the experiments were performed.
Metformin was purchased from Sigma-Aldrich; Selumetinib (AZD6244) and Pimasertib (AS-703026) from Selleck Chemicals (Selleckchem, Houston, TX, USA). They were dissolved in sterile dimethylsulfoxide (DMSO) and a 10 mM stock solution was prepared and stored in aliquots at −20°C. Working concentrations were diluted in culture medium just before each experiment.
Recombinant Sonic Hedgehog was provided by Sigma-Aldrich.
Primary antibodies for western blot analysis against p-EGFR (Tyr1068), EGFR, p-MEK1/2 (Ser217/221), MEK1/2, p-MAPK44/42 (Thr202/Tyr204), MAPK44/42, p-AKT (Ser473), AKT, AMPK, p-AMPK (thr172), S6, p-S6 (Ser235-236), Vimentin, Snail, GLI1 and β-Actin were obtained from Cell Signaling Technology. The following secondary antibodies from Bio-Rad were used: goat anti-rabbit IgG and rabbit anti-mouse IgG.
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3

Multiplex Analysis of Signaling Proteins

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Protein lysates containing equal amount of proteins, measured by a modified Bradford assay (BIORAD, Hercules, CA), were subjected to direct Western Blot (WB). Immuno-complexes were dectected with the enhanced chemiluminescence kit (ECL plus, Thermo Fisher Scientific, Rockford, IL). We used the following antibodies from Cell Signalling (Beverly, MA): anti-EGFR, anti-phospho-EGFR (Tyr1068), anti-HER2, anti-phospho-HER2 (Tyr1248), anti-HER3, anti-phospho-HER3 (Tyr1289), anti-IGF1R-beta, anti-phospho-IGF1R-beta (Tyr1135), anti-p44/42 MAPK, anti-phospho-p44/42MAPK, anti-AKT, anti-phospho-AKT (Ser 473), anti-AXL, anti-c-MET, anti-S6 ribosomal protein, anti-phospho-S6 ribosomal protein, anti-4EBP1, anti-phospho-4EBP1, anti-vimentin, anti-E-cadherin, anti-Snail. Anti-α-tubulin (internal loading control) was from Sigma (Sigma-Aldrich, St. Louis, MO). The following secondary antibodies from Biorad were used: goat anti-rabbit IgG and rabbit anti-mouse IgG. Each experiment was done in triplicate.
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4

Signaling Pathway Analysis of EGFR and MET in Cancer Cells

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GE0, SW48, GEO-CR and SW48-CR cells were seeded into 100 mm3 dishes and treated with vehicle, cetuximab, SYM004 for 24 hours at different concentration as indicated. 50 μg of protein lysates, estimated by a modified Bradford assay (Bio-Rad, Munich, Germany), were subjected to Immunoprecipitation or Western blot by using the following antibodies: HERB2 monoclonal antibody (#2165), EGFR monoclonal antibody (#4267), phospho-EGFR monoclonal antibody (#3777), MET monoclonal antibody (#3127), phospho-MET monoclonal antibody (#3077), AKT policlonal antibody (#9272), phospho-AKT monoclonal antibody (#4060), p44/42 MAPK polyclonal antibody (#9102), phospho-p44/42MAPK monoclonal antibody (#9106) were from Cell Signaling (Beverly, MA, USA). Monoclonal anti-α-tubulin antibody (T8203) was from Sigma Chemical Co. (St. Louis, MO, USA). Secondary antibodies goat anti-rabbit IgG and rabbit anti-mouse IgG were from Bio-rad (Hercules, CA, USA). Immunoreactive proteins were visualized by enhanced chemiluminescence. (ECL plus, Thermo Fisher Scientific, Rockford, IL, USA). Each experiment was done in triplicate. For immunoprecipitation 2 mg of protein lysates were immune-precipitated with the required antibodies; immune-complexes were recovered with protein G Sepharose (Roche Diagnostics) and detected by Western blotting.
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5

Western Blot Analysis of Signaling Pathways

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Following indicated treatments, cancer cells were lysed with Tween-20 lysis buffer (50 mmol/L HEPES, pH 7.4, 150 mmol/L NaCl, 0.1% Tween-20, 10% glycerol, 2.5 mmol/L EGTA, 1 mmol/L EDTA, 1 mmol/L DTT, 1 mmol/L phenylmethylsulfonylfluoride, and 10 μg/mL of leupeptin and aprotinin). Protein lysates containing equal amount of proteins, measured by a modified Bradford assay (Bio-Rad, Hercules, CA, USA), were subjected to Western blot analysis. Primary antibodies against p-MAPK44/42 (Thr202/Tyr204), MAPK44/42, p-AKT (Ser473), AKT, S6, p-S6 (Ser235-236), survivin, GAPDH and PARP were obtained from Cell Signaling Technology (Danvers, MA, USA). Secondary antibodies, goat anti-rabbit IgG and rabbit anti-mouse IgG, from Bio-Rad (Bio-Rad, Hercules, CA, USA) were used. Immunoreactive proteins were visualized by enhanced chemiluminescence (ECL plus; Thermo Fisher Scientific). Each experiment was done in triplicate.
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6

Western Blot Protein Detection

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Samples were normalized by protein concentration, determined using standard BCA assay, and separated on SDS-PAGE (Mini-protean TGX stain-free gels, 4–15% acrylamide, BioRad) under reducing conditions. Proteins were transferred to PVDF membranes using the Trans-Blot Turbo kit (Bio-Rad) according to the manufacturer’s instructions. Membranes were blocked with 5% (wt/vol) skimmed milk in PBST (PBS, 0,1% Tween 20) followed by incubation with rabbit anti-mouse IgG (1:2500, Bio-rad). The membranes were washed, followed by incubation with a secondary antibody (goat anti-rabbit HRP-conjugated antibody; Bio-Rad). The membranes were developed using Clarity Western ECL substrate (Bio-Rad) and visualized with the ChemiDoc MP Imager.
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7

Phosphokinase Profiling in Colorectal Cancer

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Protein lysates containing equal amount of proteins, measured by a modified Bradford assay (BIORAD), were subjected to immunoprecipitation or direct Western blot.
Immunocomplexes were dectected with the enhanced chemiluminescence kit (ECL plus, Thermo Fisher Scientific (Rockford, IL). We used the following antibodies from Cell Signalling (Beverly, MA): anti-ERK, anti-phospho-pERK(T202/Y204), anti-AKT, anti-phospho-AKT (S473), anti-AXL, anti-phospho-AXL (Y702), anti-phospho-S6 ribosomal protein (S236/S253). Anti-α-tubulin was from Sigma (Sigma-Aldrich, St. Louis, MO). The following secondary antibodies from Bio-rad (Hercules, CA) were used: goat anti-rabbit IgG and rabbit anti-mouse IgG. Each experiment was done in triplicate. The Proteome Profiler Array has been performed by following manufacturer's protocol. (Human Phospho-Kinase Array Kit, R&D Systems). Briefly, SW620, SW480, LOVO and HCT116 cells were serum starved for 24 hrs and 300 μg of protein lysates were obtained and incubated over night with the human phospho-kinase array in order to analyse the phosphorylation profile of the 41 kinases.
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8

Immunoblot Analysis of Canonical Signaling Pathways

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Cells were lysed with RIPA lysis buffer and protease inhibitor cocktail (Sigma #P8340). Protein concentration was determined by Pierce protein assay reagent (Thermo Fisher Scientific #1861426). Protein lysates were boiled in sample buffer (Bio-Rad #1610737). Protein samples were resolved on 10% precast gels (Bio-Rad #4568036) and transferred onto nitrocellulose membranes (Bio-Rad #1704159). Membranes were blocked in 5% blocking buffer and followed by incubation with primary antibodies and then detected with secondary antibody. The primary antibodies were specific for Smad5 (sc-7443), pSmad1/5 (CST #13820), β-catenin (sc-7963), Axin1 (Millipore #05-1579), Msx2 (sc-15396). Secondary antibodies were either HRP-conjugated goat anti-rabbit IgG (Bio-Rad #1706515) or rabbit anti-mouse IgG (Bio-Rad #1706516) and were revealed with Clarity western ECL substrate (Bio-Rad #1705061). Blots were exposed and scanned by ChemiDoc xRS + system (Bio-Rad).
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9

Western Blot Analysis of Protein Signaling

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Protein lysates containing equal amount of proteins, measured by a modified Bradford assay (Bio-Rad), were subjected to direct Western blot. Immunocomplexes were detected with the enhanced chemiluminescence kit (ECL plus, Thermo Fisher Scientific). We used the following antibodies from Cell Signaling Technology: anti-EGFR, antiphospho-EGFR (Tyr1068), anti-p44/42 MAPK, antiphospho-p44/42MAPK, anti-AKT, antiphospho-AKT (Ser 473), anti-EPHA2, antiphospho-EPHA2, antiphospho-S6 ribosomal protein, anti-PARP. Anti-a-tubulin (internal loading control) was from Sigma-Aldrich. The following secondary antibodies from Bio-Rad were used: goat anti-rabbit IgG and rabbit anti-mouse IgG. Each experiment was done in triplicate.
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