The largest database of trusted experimental protocols

24 protocols using methanol

1

Osthole Inhibits Cell Colony Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded into 6-well plates at a density of 1,000/well, grown overnight and then treated with osthole (0, 50, 100, or 150 μM) for 12 days. At the end of the experiments, the cells were fixed with methanol (Sangon Biotech Co., Ltd., Shanghai, China) for 20 min and stained with 0.5% crystal violet (Sangon Biotech). Cell colonies with ≥50 cells were counted using an inverted microscope (Leica Microsystems GmbH, Wetzlar, Germany) in five randomly selected fields.
+ Open protocol
+ Expand
2

Evaluating Cell Proliferation and Colony Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
After transfection, (3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide) MTT assay was carried out to assess cell proliferation. Briefly, 100 μl of the transfected CaOV3 and SKOV3 cells was resuspended and seeded into 96-well plates at a concentration of 1 × 104 cells per well. Then, 50 μl of MTT reagent that was dissolved in PBS was respectively provided into each well at 0, 12, 24, 48, and 72 h after transfection, and the mixtures were maintained in a 37°C incubator for another 4 h. Thereafter, 150 μl of dimethyl sulfoxide (DMSO) was supplied into each well to dissolve the formazan. The optical density (OD) at 570 nm was measured utilizing a microplate reader (Bio-Rad, Hercules, CA, United States). Cell proliferation ratio (%) was calculated according to the formula listed below: Cell proliferation ratio (%) = ODexperimental group/ODNC × 100%.
After transfection, CaOV3 and SKOV3 cells were resuspended and plated into 6-well plates at a concentration of 1,000 cells per well. Then, the plates were maintained in a humidified incubator under 5% CO2 and 37°C conditions for 2–3 weeks. Colony fixation and staining were respectively conducted utilizing methanol and 0.1% crystal violet (Sangon Biotech). Finally, the images of the colonies were photographed with a microscope (Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
3

Colony Formation Assay of ESCC Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
ESCC cells were inoculated into 6-well plates at 300 cells per well. After 14-d culture at 37°C incubator with 5% CO2/95% air, the colonies were fixed with methanol (Sangon Biotech) for 15 min followed by staining using 0.1% crystal violet (Sangon Biotech) for 15 min. The number of colonies was counted.
+ Open protocol
+ Expand
4

Cell Viability, Proliferation, and Colony Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell counting kit‐8 (CCK‐8) assay was utilized for examining cell viability. Shortly, transfected tumor cells (2000 cells per well) were mixed with CCK‐8 reagent (10 μl, Beyotime, Jiangsu, China) at indicated time points. After being incubated for 3 h, absorbance was detected according to a microplate reader. The experiment was conducted thrice.
For the 5‐ethynyl‐2′‐deoxyuridine (EdU) assay, transfected SCL‐1 and A431 cells in 24‐well plates were reacted with 20 μM of EdU solution (Beyotime) for 2 h, followed by a 4% paraformaldehyde fixture. After being added with Click Additive Solution, cells were subjected to staining nucleic acids using 4′,6‐diamidino‐2‐phenylindole. Under a fluorescence microscope (×100; Leica, Wetzlar, Germany), EdU‐positive cells were analyzed. This assay was carried out at least three times.
In addition, tumor cells in six‐well plates were cultured 14 days later. The generated colonies (cell mass containing > 50 cells) were fixed using methanol (Sangon Biotech, Shanghai, China) and stained with Giemsa (Beyotime), followed by calculating using a microscope. Colony formation assay was conducted at least three times.
+ Open protocol
+ Expand
5

Transwell Invasion Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
At the beginning, the low side of the upper chamber of the transwell chamber (Corning Life Sciences) was firstly enveloped with matrigel (Corning Life Sciences). Then cell suspension in serum-free medium was pipetted into the upper chamber, accompanying with the adding of RIPM-1640 containing 10% FBS into the lower chamber. Subsequently, cells were fixated using methanol (Sangon Biotech) and colored with crystal violet (Sangon Biotech) 48 h later. Ultimately, invaded cells were counted through a microscope after uninvaded cells were wiped off with a wet cotton swab.
+ Open protocol
+ Expand
6

Preparation of Yeast Growth Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
A total of 10 g yeast extract, 20 g peptone, 3.4 g yeast basic nitrogen source (YNB) and 10 g ammonium sulfate were added to 900 mL deionized H2O and autoclaved for 45 min, and then mixed with 100 mL of separately sterilized 1 M potassium phosphate buffer (pH 6.0, Sangon Biotech, Shanghai) with 4 × 10−5 % (m/v) biotin (Sangon Biotech, Shanghai) to prepare the BMY medium. In all, 1% (v/v) glycerin (Lingfeng, Shanghai) or 1% (v/v) methanol (Sangon Biotech, Shanghai) was added to the BMY medium to prepare BMGY or BMMY medium.
+ Open protocol
+ Expand
7

Cell Invasion Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells (1 × 105 cells) in 100 μl medium without fetal bovine serum (FBS) were seeded into Matrigel matrix (1.5 mg/ml)-coated insert (Invitrogen, USA). The lower chamber was filled with 10% FBS-containing medium. After incubation for another 24 h, the non-invading cells were removed from the upper surface of the insert. The cells attached to the bottom surface of insert were fixed with methanol (Sangon, China) and stained with 0.5% crystal violet (Sangon, China). The numbers of invaded cells were counted under an inverted light microscope (Nikon, Japan).
+ Open protocol
+ Expand
8

Transwell Assay for Cell Invasion

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell invasive capability was assessed by 24‐well transwell inserts (8 μm pore size, Costar, Corning). In brief, the transfected cells were suspended in FBS‐free medium and added into the top chamber precoated with Matrigel. Meanwhile, complete medium was added to the bottom chambers (600 μl). Then, 24 h later, cells that had invaded to the bottom surface of the chamber were fixed using methanol (Sangon Biotech). After staining with crystal violet (Beyotime), the images were captured under a microscope (Olympus) at × 100 magnification.
+ Open protocol
+ Expand
9

Genome sequencing of Monascus conica SH

Check if the same lab product or an alternative is used in the 5 most similar protocols
M. conica SH was collected from a local farm affiliated to Yunnan Academy of Agricultural Sciences, Yunnan Province, China. M. conica SH was sequenced with a whole-genome shotgun sequencing strategy. The sequencing data was submitted to NCBI database (NCBI Sequencing Program VOVZ00000000). Yeast extract, peptone, macro agar, yeast nitrogen base (YNB) with ammonium sulfate without amino acids, biotin, buffered glycerol-complex medium (BMGY), glycerol and methanol were purchased from Sangon (Shanghai, China). Selective marker zeocin was purchased from Invitrogen (California, USA). LB agar medium supplemented with kanamycin was used for E. coli DH10B cultivation, Yeast extract peptone dextrose (YPD) supplemented with zeocin was used for P. pastoris X33 cultivation, BMGY was used for the recombinant FIP-mco expression.
+ Open protocol
+ Expand
10

Cultivation of D. catenatum Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
One-year-old D. catenatum plants were artificially cultivated in pine-bark pots and allowed to grow in a glass house at the Orchid Conservation & Research Center of Shenzhen (Shenzhen, China). The conditions provided were day/night temperature of 25/18 °C, relative humidity of 60%, and natural light. N. benthamiana and A. thaliana were grown on soil in a culture room on soil under a 16 h light/8 h dark photoperiod, with an illumination intensity of 2000 LX at 22 °C and a relative humidity of 65%. The dendrobine standard (CAS, 2115-91-5) was purchased from the National Institutes for Food and Drug Control (Beijing, China). Methanol, chloroform, and other regularly used chemicals (analytical grade) were purchased from Sangon Biotech Co., Ltd. (Shanghai, China).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!