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7 protocols using gar0072

1

Phenotypic Characterization of MSCs and MSC-EVs

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For phenotypic characterization, MSCs and MSC-EVs were lysed via lysis buffer (10 mM Tris-HCl, pH 7.4, 150 mM NaCl, 0.5% Nonidet P-40, 1 mM EDTA, 1 mM Na3VO4, and 1 mM PMSF). Equal amount of total proteins from samples (20 μg or 40 μg) were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA), and detected via Western blot analysis. The primary antibodies used in the study included the following: CD63 (0.5 μg/ml; ab193349, Abcam, Cambridge, MA), CD81 (1:1000; sc-166029, Santa Cruz Biotechnology, Santa Cruz, CA), CD105 (1:1000; ab169545, Abcam), CD44 (1:5000; ab157107, Abcam), GM130 (1:5000; ab52649, Abcam), and Calnexin (1:5000; ab133615, Abcam). After washing, membranes were incubated with secondary antibodies conjugated to horseradish peroxidase. Goat anti-Rabbit lgG (H+L) HRP Conjugated (1:5000, GAR0072, Multi Sciences, Hangzhou, China) and goat anti-Mouse lgG (H+L) HRP Conjugated (1:5000, GAM0072, Multi Sciences, Hangzhou, China) were used as Secondary antibodies. The signals were detected via enzyme-linked chemiluminescence using the EZ-ECL kit (Biological Industries, Kibbutz Beit-Haemek, Israel).
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2

Immunoblotting for Cell Cycle Regulators

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Harvested cells were lysed using M‐PERTM Mammalian Protein Extraction Reagent (Thermo Scientific) with protease and phosphatase inhibitors (Beyotime). Protein concentration was determined by BCA protein quantification kit (Beyotime). Equal amounts of the proteins were loaded into SurePAGEᵀᴹ precast polyacrylamide gels with a gradient between 4% and 20% (GenScript) and transferred to PVDF membranes (Millipore) by eBlot® L1 wet protein transfer system (GenScript). After blocking, the membranes were incubated with primary antibodies overnight at 4℃. Then, the membranes were incubated with HRP‐conjugated anti‐mouse or anti‐rabbit secondary antibody (GAM0072 or GAR0072, Multisciences). The protein bands were visualized by High‐sig ECL Western Blotting Substrate (Tanon). Images were collected using the Tanon‐5200 Chemiluminescent Imaging System (Tanon). The expression of β‐actin was detected as a loading control.
All primary antibodies were commercial products. Anti‐TAB182, anti‐CDC2 (sc‐137035), anti‐phospho‐CDC2 (sc‐136014) were purchased from Santa Cruz. Anti‐FHL2 was purchased from Proteintech. Anti‐CHK2 (ab207446), anti‐phospho‐CHK2 (ab32148) were purchased from Abcam; anti‐CDC25C (YM0142), anti‐phospho‐CDC25C (YP0058) were purchased from ImmunoWay. Anti‐β‐actin (ab008) was purchased from Multisciences.
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3

Quantification of Guanylate Cyclase and Protein Kinase cGMP Levels

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Samples were homogenized in liquid nitrogen and thawed in RIPA buffer containing protease inhibitors. The protein abundances of GUCY1A3 (guanylate cyclase 1 soluble subunit alpha), GUCY1B3 (guanylate cyclase 1 soluble subunit beta), and PRKG1 (protein kinase cGMP-dependent 1) were normalized to GAPDH. The primary antibodies for GUCY1A3 (Proteintech, Cat#12605-1-AP), GUCY1B3 (Proteintech, Cat#19011-1-AP), and PRKG1 (Proteintech, Cat#21646-1-AP) were incubated overnight at 4°C. Secondary antibodies (goat anti-mouse for GAPDH, GAM0072; goat anti-rabbit for the others, GAR0072, Multisciences) were incubated for 1 h at room temperature. The immunoreactive bands were visualized using the UVP imaging system. Imaging signals were digitized and analyzed, and the ratio of band intensity to GAPDH was subsequently obtained to quantify relative protein expression.
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4

Protein Expression Analysis in Rat Brains

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Each rat was guillotined and the brain was quickly dissected out and lysed by ultrasonication in an ice bath. Twenty micrograms of total protein was fractionated on 10% polyacrylamide gel. Proteins were then transferred to PVDF membranes for 2 h at 200 mA in an ice bath. The membranes were blocked in 5% non-fat milk powder at RT for 2 h and then incubated with primary antibodies (GAPDH, 1:1000, Hangzhou Goodhere Biotechnology, AB-P-R001; P2X4Rs, 1:500, Alomone Labs, APR-002; and ATM, 1:100, Santa Cruz, CA; sc-23921) at 4°C overnight. Then, the membranes were incubated with HRP-conjugated secondary antibodies (GAR0072 or GAM0072, 1:2000, Multi Science, Hangzhou, China) at RT. Bands were visualized using an enhanced chemiluminescence detection kit for HRP (EZ-ECL, Biological Industries, Kibbutz Beit Haemek, Israel; 20-500-120) and appropriately exposed in a chemiluminescence imaging system (ChemiDoc XRS, Bio-Rad, Hercules, CA). Band intensities were measured using ImageJ. Protein expression was normalized to GAPDH.
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5

Characterizing Phototherapeutic Effects In Vitro

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The following instruments were used during the study: an He-Ne laser therapeutic instrument (JH30C, Shanghai Jiading Photoelectric Instrument Co., Ltd.); a needle-knife (Hanzhang Needle-knife HZ, Beijing Zhuoyue Huayou Medical Equipment Co., Ltd.); needles for acupuncture (Wujiangshi Jiachen Acupuncture Instrument Co., Ltd., 0.25x40mm); scanning electron microscope (Hitachi SU1510, Japan), Physisorption Apparatus (American Micromeritics ASAP2020); Microplate Reader (SpectraMax Plus 384, Molecular Devices Inc.); Electrophoresis System (Mini-Protean Tetra System, Bio-Rad) and a gel imaging instrument (ChemiDoc XRS + System, Bio-Rad). The following antibodies were used: (1) AKT: bs-6951R, Bioss. (2) PI3K: BA1352-2, Boster. (3) VEGF: ab46154, Abcam. (4) GAPDH: b36703, MultiSciences. (5) Goat anti-Rabbit IgG: GAR0072, MultiSciences. (6) Goat anti-Mouse IgG: GAM007, MultiSciences.
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6

Quantifying DNA Hydroxymethylation by Dot Blot

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Ovaries were used for genomic DNA extraction. Genomic DNA was extracted using phenol: chloroform: isoamyl alcohol (25:24:1, Solarbio). Dot blot analysis was performed to detect hydroxymethylation levels. Ten microliters of 100 ng/μl genomic DNA was denatured with 10 μl of 2 M NaOH for 60 min. Two microliters of genomic DNA was spotted on an NC membrane (Millipore). The membrane was dried at RT for 30 min and incubated for 60 min at 75 °C. The membrane was then blocked with 5% BSA in TBS-T for 1 h and incubated overnight with a rabbit anti-5-hmC polyclonal antibody (1:30,000, 39,769, Active) in TBS-T at 4 °C. The membrane was incubated with a goat anti-rabbit IgG secondary antibody (1:5000; GAR0072, Multisciences, China) in TBS-T for 1 h at RT. The dot blot intensity was quantified by a UVP imaging system (Tanon-5200, Shanghai China). The gray value was analyzed by Image J software.
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7

Comprehensive Protein Analysis Workflow

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Western blots were performed by separating proteins on SDS-PAGE gels followed by protein transfer to PVDF membranes (Bio-Rad). The antibodies used were: anti-PDGFD (sc-137030, Santa Cruz), anti-SOX2 (AF-2018, R&D), anti-BRACHYURY (sc-166962, Santa Cruz), anti-ERKs (4696, Cell Signaling Technology), anti-Phospho ERKs (4370, Cell Signaling Technology), anti-PDGFR-β (3169, Cell Signaling Technology), anti-Phospho PDGFR-β (Tyr1021) (2227, Cell Signaling Technology), anti-PECAM1 (222783, Abcom), anti-Phospho STAT3 (9145, Cell Signaling Technology), anti-STAT3 (9139, Cell Signaling Technology), anti-KDR (9698, Cell Signaling Technology), anti-HSP90 (7411, Cell Signaling Technology), anti-TUBULIN (RM2007, Ray Antibody), anti-β-ACTIN (RM2001, Ray Antibody), anti-GAPDH (70-Mab5465-040, MultiSciences), anti-HISTONE 3 (GB13102-1, Servicebio), Goat anti-mouse IgG (GAM0072, MultiSciences), Goat anti-rabbit IgG (GAR0072, MultiSciences), Rabbit anti-goat IgG (RAG0072, MultiSciences), anti-PDGFB (PA1-27394, Invitrogen), anti-uPA (17968-1-AP, Proteintech) and anti-PLASMIN (66399-1-Ig, Proteintech). The bands were visualized using a GBOX-CHEMI-XX8 device (SYNGENE).
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