The largest database of trusted experimental protocols

Faststart universal master mix

Manufactured by Roche
Sourced in United States

FastStart Universal Master Mix is a ready-to-use reaction mix designed for real-time PCR applications. It contains all the necessary components, including a FastStart Taq DNA Polymerase, for the amplification of DNA targets.

Automatically generated - may contain errors

11 protocols using faststart universal master mix

1

Validating Intergenic Variation in Mycobacterium Tuberculosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The intergenic variation mapping between embC and embAB genes inVPCI591 was validated by Sanger sequencing using the primers, forward (CCTAGGAACGGTGACTCG) and reverse (AGACGACGGCTGCTAGGC). For expression analysis total RNA was extracted from the clinical isolate VPCI591 and H37Rv using the RNeasy mini kit (Qiagen) and was treated with DNase using TURBO™ DNase kit (Invitrogen) and cDNA was prepared using First strand cDNA synthesis kit (Fermentas K1612). Quantitative PCR was performed with sigA/Rv2703 gene as control and fold change was measured by ΔΔCt method using FastStart universal master mix (Roche). The following primers were used: embA (F- GTAATGAGCGATCTCACCGG/ R- CGGTGATCTGGGTGATGTTG); sigA (F- AACGCACCGCCACCAAGTC/ R- TGGTGCTGGTCGTAGTGTCCTG).
+ Open protocol
+ Expand
2

Quantitative Expression Analysis of Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the cells at 72 h and 144 h using TRIzol® reagent (Thermo Fisher Scientific, Inc.) and purified using the NucleoSpin® RNA Clean-up kit. The following generation of cDNA uses the AffinityScript Multiple Temperature cDNA Synthesis kit according to the manufacturer's protocol. The real-time PCR FastStart Universal Master Mix (Roche Diagnostics) was used to determine the relative expression levels of genes with an ABI 7500 Fast Real-Time PCR system (Applied Biosystems, Thermo Fisher Scientific, Inc.). The reactions were performed at 95°C for 15 s, 60°C for 40 s, and 40 cycles. The gene-specific primers are given in Table 1.
+ Open protocol
+ Expand
3

qPCR Analysis of AML Cell Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was extracted from AML cells and quantified using qPCR. The RNA extraction kit was supplied by Macherey-Nagel, Düren, Germany. Reverse transcription was done with MMLV-RT (Promega, Madison, WI, USA). Real-time PCR was performed on the QuantStudio 7 Real-Time PCR Instrument using FastStart Universal master mix (Roche Diagnostics, Mannheim, Germany) and gene-specific probes (Cat# 4331182, Thermo Fisher Scientific, Waltham, MA, USA) Hs00355782_m1 (CDKN1A), Hs04986394_s1 (BCL2), and Hs02758991_g1 (GAPDH). Measurements for CDKN1A and BCL2 were normalized with GAPDH values (ddCt relative quantitation). Assays were performed in three or more independent experiments. Data are depicted in column bar graphs plotting mean with SD values.
+ Open protocol
+ Expand
4

Quantifying VZV Gene Expression in Infected Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
VZV-infected human neurons harvested at 21 dpi were analyzed for abundance of viral DNA and RNA. DNA and RNA were isolated using ZR Duet DNA/RNA Kit (Zymo Research, Irvine, CA), after which mRNA was isolated by binding to oligo(dT) beads (uMACS; Miltenyi, Bergisch Gladback, Germany) and reverse transcribed using the Superscript IV cDNA Synthesis Kit (LifeTechnologies). Quantitative TaqMan PCR (FastStart Universal MasterMix, Roche, Basel, Switzerland) was performed on an ABI 7500 FAST to quantify viral DNA using primers targeted to a locus within ORF68 (F: GTACATTTGGAACATGCGCG; R: TCCACATATGAAACTCAGCCC) and cDNA with primers targeted to four different viral loci: ORF62 (F: CCTTGGAAACCACATGATCGT; R: AGCAGAAGCCTCCTCGACAA), ORF63 (F: TAGCGACGATGATGGGTCTA; R: GTGCTCTCCTCTGATTCTTCTTC), ORF29 (F: GGCGGAACTTTCGTAACCAA; R: CCCCATTAAACAGGTCAACAAAA), and ORF68 (same as DNA primers, above).
+ Open protocol
+ Expand
5

qPCR Quantification of Mitochondrial DNA Copy Number

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total DNA was isolated with Qiagen DNA Mini Kit (Qiagen,
Germany). Relative changes in mtDNA copy number were
analyzed with quantitative polymerase chain reaction (qPCR).
The mtDNA-encoding mitochondrial NADH dehydrogenase(MT-ND1) gene
specific primers (Integrated DNATechnologies,
USA) and Universal Probe Library (UPL) probes (Roche,
USA) were used for the analysis of changes in mtDNA copynumber.
The nuclear DNA-encoding beta globin (HBB) genespecific primers
(Integrated DNATechnologies, USA) and UPLprobe (Roche, USA) were
used for normalization of expression
changes since each cell has twoand multiple copies of nuclear
and mitochondrial genomes respectively and this may thus beused for normalizing data. The primers and probes that are usedin for this test are shown in Table 1. For all qPCR reactions,
FastStart Universal Master Mix (Roche, USA) and the Roche
Light Cycler 480 instrument (Roche, USA) were used.
+ Open protocol
+ Expand
6

Pyramidal Cell RNA Isolation and qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA isolation from enriched pyramidal cell populations was executed using the PicoPure RNA isolation kit, following the prescribed guidelines from the manufacturer (Molecular Devices, Sunnyvale, CA, USA). For cDNA synthesis, the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, USA) was employed, utilizing 10 μL of total RNA. TaqMan primers for A1R (ADORA1); A2AR (ADORA2A); and housekeeping genes cyclophilin A (PPIA), beta actin (ACTB), beta2-microglobulin (B2M), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were pooled, diluted with RNAse/DNase-free water to a final concentration of 0.2X, and combined with FastStart Universal Mastermix (Roche Life Sciences, IN, USA) and cDNA for the pre-amplification polymerase chain reaction (PCR). The PCR cycles comprised 1 cycle of denaturing at 95 °C for 10 min, followed by 14 cycles of denaturing at 95 °C for 14 s, and annealing at 60 °C for 4 min. After pre-amplification, samples were diluted at a 1:5 ratio with RNase-free water and preserved at −20 °C until they were used for real-time quantitative PCR (qPCR) assays.
+ Open protocol
+ Expand
7

Quantifying miR-376c-3p and RAB2A Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from tissue samples and BCSCs using TRIzol® (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. To assess miR-376c-3p expression levels, the TaqMan MicroRNA Assay kit (cat. no. 4427975; Assay ID: 002122; Applied Biosystems; Thermo Fisher Scientific, Inc.) was used for reverse transcription and qPCR according to the manufacturer's protocol (primer sequences were withheld by the supplier). For RT-qPCR analysis of RAB2A mRNA, total RNA was reversed transcribed into cDNA using the GoScript Reverse Transcription system (Promega Corporation). Subsequently, qPCR was performed using FastStart Universal Master Mix (Roche) and a StepOnePlus real-time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). The thermocycling conditions were as follows: 40 cycles of denaturation at 94˚C for 30 sec, annealing at 58˚C for 30 sec and extension at 72˚C for 60 sec. The following primers were used for qPCR: RAB2A forward, 5'-AGTTCGGTGCTCGAATGATAAC-3' and reverse, 5'-AATACGACCTTGTGATGGAACG-3'; GAPDH forward, 5'-TGCACCACCAACTGCTTAGC-3' and reverse, 5'-GGCATGGACTGTGGTCATGAG-3'; and U6 forward, 5'-CTCGCTTCGGCAGCACA-3' and reverse, 5'-AACGCTTCACGAATTTGCGT-3'. Samples were quantified using the 2-∆∆Cq method (32 (link)). miRNA and mRNA expression levels were normalized to the internal reference genes U6 and GAPDH, respectively.
+ Open protocol
+ Expand
8

Paeonol and DNCB-Induced Skin Inflammation Study

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paeonol was provided by the National Institutes for Food and Drug Control (Beijing, China). DNCB (cat. no. 237329; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) was dissolved in acetone and olive oil (3:1 v/v). Paeonol was dissolved in normal saline to achieve various concentrations for oral administration. Prednisolone (Pred; cat. no. BP464; Sigma-Aldrich; Merck KGaA) was dissolved in normal saline to a concentration of 10 mg. TRIzol® was purchased from Invitrogen (Thermo Fisher Scientific, Inc., Waltham, MA, USA). The NucleoSpin® RNA Clean-up kit was obtained from Macherey-Nagel GmbH & Co. KG (Düren, Germany). The real-time polymerase chain reaction (RT-PCR) FastStart Universal Master mix was purchased from Roche Diagnostics (Indianapolis, IN, USA) and the AffinityScript Multiple Temperature cDNA Synthesis kit was purchased from Agilent Technologies, Inc. (Santa Clara, CA, USA).
+ Open protocol
+ Expand
9

Cytokine mRNA Expression Analysis by RT-qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
RT-qPCR was conducted to detect the mRNA expression levels of various cytokines, according to the manufacturers' protocols, and the conditions were similar to those described in a previous study (16 (link)). Total RNA was isolated from the excised skin using TRIzol® and purified using the NucleoSpin® RNA Clean-up kit. Following generation of cDNA using the AffinityScript Multiple Temperature cDNA Synthesis kit according to the manufacturer's protocol. The real-time PCR FastStart Universal Master Mix (Roche Diagnostics) was used to determine the relative expression levels of genes with an ABI 7500 Fast Real-Time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). The gene-specific primers are listed in Table I. The cycle parameters were as follows: 95°C for 10 min, followed by 50 cycles at 95°C for 15 sec and 60°C for 60 sec. β-actin was used as a reference gene to normalize the data, which were quantitatively analyzed using the 2−ΔΔCq method (19 (link)).
+ Open protocol
+ Expand
10

AKT SNP Genotyping in ACC

Check if the same lab product or an alternative is used in the 5 most similar protocols
gDNA was extracted from cryosections of the ACC with the QIAMP DNA Mini Kit (Qiagen) according to the manufacturer’s protocol. DNA concentration was measured via nanodrop and all subjects were normalized to 16.2 ng/uL. Taqman genotyping assays (Applied Biosystems) for AKT SNPs rs1130214 (C_26352825_10), rs2494732 (C_16191608_10), rs1130233 (C_7489835_10), and rs3730358 (C_193157_10) were used to genotype ACC samples. Each reaction was performed in duplicate in a 25 L volume consisting of 12.5 L Fast Start Universal Master Mix (Roche), 1.25 L TaqMan assay working stock (20x), and 11.25 L gDNA. Cycling conditions included a 10-minute hold at 95°C followed by 40 cycles of 95°C for 15 seconds and 60°C for 1 minute. Each assay was performed in 96-well optical reaction plates (Applied Biosystems) on an ABI Stepone Plus (Applied Biosystems) qPCR system.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!