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3 protocols using tbs t

1

Western Blotting of 25-HC Treated Cells

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Cells (1 × 105 cells/mL) were cultured in 6-well culture plates and then treated with 0, 1, and 5 μg/mL 25-HC for 48 h. Thereafter, total proteins were extracted from the L929 cells using cell lysis buffer (Cell Signaling Technology), according to the manufacturer’s instructions. Protein concentration was determined using a bicinchoninic acid protein assay (Thermo Fisher Scientific). Equal amounts of each protein sample were electrophoresed on a 10% sodium dodecyl sulfate polyacrylamide gel and subsequently transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Burlington, MA, USA) at 4 °C. Thereafter, the PVDF membrane was blocked using 5% (v/v) bovine serum albumin (BSA; Sigma-Aldrich) prepared in Tris-buffered saline with Tween 20 (TBS-T; Santa Cruz Biotechnology Inc., Dallas, TX, USA) and then incubated with the primary antibodies diluted 1:1000 in TBS-T containing 5% (v/v) BSA at 4 °C for 12 h. The immunoreactive bands were visualized using the ECL System (Amersham Biosciences, Piscataway, NJ, USA) and exposed on radiographic film or MicorChemi 4.2 (Dong-Il Shimadzu Corp., Seoul, Korea).
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2

Western Blot Analysis of ADAM9

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A total of 16 µl pure protein lysate of the sample with the lowest concentration was used. A comparative amount of protein lysate from the other samples was diluted in water (in all 16 µl volume) and used. These samples were mixed with sample buffer (6.25 µl) and reducing agent (2.5 µl), incubated at 70°C for 10 min, and centrifuged for 1 min at 11,000 × g. 20 µl of each sample were loaded onto a 4–12% polyacrylamide NuPage Bis-Tris gel (Invitrogen). Electrophoresis was running for 1 h at 200 V and 120 mA using the XCell SureLock system (Invitrogen). The transferring of the separated proteins to nitrocellulose membranes (Invitrogen) was done with the iBlot kit and system (Invitrogen) following the manufacturer´s instructions. Blocking of the membrane was carried out with 5% nonfat milk powder (Roth) in TBST (0.1% Tween 20) at room temperature for 1 h and probed with mouse polyclonal antibody 57934 against human ADAM9 (Abcam) at a dilution of 1:500 in TBST (GE Healthcare UK Limited) and with γ-tubulin antibody T6557 in a dilution of 1:5,000 in TBST (Sigma). The secondary antibody, sheep anti-mouse IgG-HRP NA931V (Amersham), was diluted in TBST (1:1,000). For protein detection the ECL Western Blotting Analysis System (Amersham) was used. Visual analysis was performed by two independent investigators, evaluating the presence or absence of specific protein bands.
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3

Western Blot for Quantifying BDNF Isoforms in CSF

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CSF samples were obtained as described in 2.2., from control and AD-affected patients and maintained at 4 °C for less than 4 h. Previously to the western blotting, CSF samples were concentrated 20X using Amicon Ultra 10,000 MWCO (Ultracel Low Binding Cellulose) (Millipore). Protein concentration was determined by DC-Protein Assay (Bio-Rad). Proteins were separated by electrophoresis in 12% SDS-PAGE and transferred to Immobilon-P membranes (Millipore). Membranes were blocked for 1 h at room temperature in TBS-T (50 mM Tris, pH 8.0; 133 mM NaCl, 0.2% Tween 20) with 5% skimmed milk and incubated with primary antibodies against the mature BDNF (1:1000 in TBS-T (Alomone) at 4 °C overnight and with HRP-conjugated secondary antibodies (Jackson) (1:5000 in TBS-T) at room temperature for 1 h. Detection was performed using an ECL chemiluminescence system (Amersham-Pharmacia) following the manufacturer’s instructions. For densitometry analysis of the immunoreactive bands, we used ImageJ (http://rsbweb.nih.gov/ij/) with local background subtracted. For each sample, the relative abundance of each BDNF isoform was expressed as a ratio of that particular BDNF isoform related to the total BDNF signal (sum of proBDNF and mature BDNF). The data were shown as the mean ± standard deviation (SD). Differences between groups were calculated using a 2-tailed Student’s t-test.
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