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7 protocols using cd8β yts156

1

Multiparametric Flow Cytometry Analysis

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Data were acquired on LSR Fortessa or LSRII flow cytometers (BD Biosciences) and analyzed using FlowJo and softwares designed by the Division of Computer Research and Technology, NCI. Live cells were gated using forward scatter exclusion of dead cells stained with propidium iodide. The following antibodies were used for staining: TCRβ (H57-597), B220 (RA3-6B2), NK1.1 (PK136), CD11b (M1/70), CD44 (IM7), CD103 (2E7), and CD69 (H1.2F3), all from eBioscience; CD3 (2C11), CD4 (GK1.5), CD8α (53-6-7), TCRγδ (GL3), and CD11c (HL3), all from BD Biosciences; and CD45 (30-F11), CD8β (YTS156.7.7), and Ly6C (HK1.4) from BioLegend. CD1d tetramers loaded with PBS-57 and unloaded controls were obtained from the NIH tetramer facility (Emory University, Atlanta, GA, USA).
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2

Quantitative Immunofluorescence Imaging of Intestinal Tissues

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Intestinal tissues were fixed in 4% paraformaldehyde, rehydrated in 20% sucrose, and frozen in OCT media (Sakura). Tissues were cut into 7-8μm sections and treated with ice cold acetone. Sections were treated with biotin-avidin blocking reagent when necessary (Vector labs) and stained with the following biotinylated or directly conjugated antibodies: CD8β (YTS156.7.7, Biolegend), CD4 (RM4-5, eBioscience), CD103 (M290, BD Biosciences), CD90.1 (HIS5.1, eBioscience), Epcam (G8.8, Biolegend), CD11c (HL3, BD Biosciences), B220 (RA3-6B2, eBioscience). Rabbit anti-Yersinia pseudotuberculosis (ab26120, Abcam) and anti-rabbit Dylight 649 (ab96926, Abcam) were used to stain for bacterial antigens. Stained slides were mounted with Prolong Gold antifade reagent (Invitrogen), imaged using a Nikon 90i, and analyzed using Adobe Photoshop software.
The number of OT-I cells/villus was determined by sectioning a ‘Swiss roll’52 (link) of the distal third of the small intesine. Five or more sections/mouse that were at least 400μm apart were stained and imaged. A villus and the underlying submucosa and muscularis were considered a single villus, and the number of OT-I cells in each region was determined. The number of OT-I cells/villus were binned and plotted as the percentage of villi containing a given range of OT-I cells.
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3

Multiparametric Analysis of Intestinal Immune Cells

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Intestinal tissues were fixed in 4% paraformaldehyde, rehydrated in 20% sucrose, and frozen in OCT media (Sakura). Tissues were cut into 7–8μm sections and treated with ice cold acetone. Sections were treated with biotin-avidin blocking (Vector labs) and stained with the following biotinylated or directly conjugated antibodies:
CD8β (YTS156.7.7, Biolegend), CD45.2 (104, eBioscience), Epcam (G8.8, Biolegend), CD11b (M1/70, eBioscience), and CD11c (HL3, eBioscience). For identification of YFP-producing cells, sections were stained with anti-GFP (Abcam, ab6556), anti-rabbit-FITC (Abcam, ab6108), and anti-FITC-AlexaFlour488 (Invitrogen, polyclonal) antibodies. No reactivity was observed in infected YFP-negative mice. Stained slides were mounted with Prolong Gold antifade reagent (Thermo Fisher Scientific), imaged using a Nikon 90i, and analyzed using Adobe Photoshop software.
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4

Quantitative Immunofluorescence Imaging of Intestinal Tissues

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Intestinal tissues were fixed in 4% paraformaldehyde, rehydrated in 20% sucrose, and frozen in OCT media (Sakura). Tissues were cut into 7-8μm sections and treated with ice cold acetone. Sections were treated with biotin-avidin blocking reagent when necessary (Vector labs) and stained with the following biotinylated or directly conjugated antibodies: CD8β (YTS156.7.7, Biolegend), CD4 (RM4-5, eBioscience), CD103 (M290, BD Biosciences), CD90.1 (HIS5.1, eBioscience), Epcam (G8.8, Biolegend), CD11c (HL3, BD Biosciences), B220 (RA3-6B2, eBioscience). Rabbit anti-Yersinia pseudotuberculosis (ab26120, Abcam) and anti-rabbit Dylight 649 (ab96926, Abcam) were used to stain for bacterial antigens. Stained slides were mounted with Prolong Gold antifade reagent (Invitrogen), imaged using a Nikon 90i, and analyzed using Adobe Photoshop software.
The number of OT-I cells/villus was determined by sectioning a ‘Swiss roll’52 (link) of the distal third of the small intesine. Five or more sections/mouse that were at least 400μm apart were stained and imaged. A villus and the underlying submucosa and muscularis were considered a single villus, and the number of OT-I cells in each region was determined. The number of OT-I cells/villus were binned and plotted as the percentage of villi containing a given range of OT-I cells.
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5

Isolation and Characterization of Lymphocytes

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Lymphocytes were isolated from peripheral tissues as previously described (23 (link)). Isolated lymphocytes were stimulated with LCMV gp33–41 peptide (1µg/ml) for 4hrs at 37°C and cytokine secretion was evaluated as described earlier (35 (link)). Single cell suspensions were stained with antibodies against CD69 (H1.2F3), CD44 (IM7), Thy1.1 (OX-7), CD62L (MEL-14) from Biolegend, CD8a (53–6.7), CD103 (M290), CD45.1 (A20), CD45.2 (104), IFNγ (XMG1.2), TNFα (MP6-XT22), IL2 (JES6-5H4) from eBioscience and BrdU (B44) from BDBiosciences. Samples were acquired on a Fortessa flow cytometer (BD Biosciences). Immunofluorescence was performed as described(36 (link)). Antibodies against Thy1.1 (OX-7), CD45.1 (A20), and CD8β (YTS156.7.7) from Biolegend were used to stain sections.
For in situ tetramer staining, mouse female reproductive tracts were manually cut into ~500 µm sections using a surgical blade. Tissue pieces were incubated with PE conjuagted tetramers in a 2% fetal bovine serum in phosphate buffered saline (PBS) overnight at 4°C. The next day, tissues were washed with ice cold PBS three times on ice. Tissue pieces were then fixed in 2% paraformaldehyde in PBS for 2 hours, then washed in PBS and then placed in a 30% sucrose PBS solution overnight. The next day tissue pieces were frozen in OCT.
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6

Intracellular IFNγ Production Assay

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Leukocytes were stained for CD8β (YTS156.7.7; Biolegend), CD4 (RM4–5; BD Pharmingen), CD44 (IM7; eBiosciences), IFNγ (XMG1.2; BD Pharmingen). For intracellular cytokine staining, splenocytes from recipient mice were incubated with LPS-matured, irradiated syngeneic (H2b) or allogeneic (H2d) stimulator cells and assessed for intracellular IFNγ production as described previously (20 (link)). Samples were analyzed on an LSRII flow cytometer (Becton Dickinson).
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7

Immunofluorescent Tissue Staining Protocol

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Harvested mouse tissues were fixed in 2% paraformaldehyde for 2 h before being treated with 30% sucrose overnight for cryoprotection. The sucrose-treated tissue was embedded in OCT tissue-freezing medium and frozen in a 2-methyl butane liquid bath. Frozen blocks were processed, stained, imaged, and enumerated by QIM as described (Steinert et al., 2015 (link)). Tissues were stained with antibodies to the following markers: CD4 (GK1.5; BD Biosciences), CD90.1 (OX-7; BD Biosciences), CD45.1 (A20; BioLegend), B220 (RA3-6B2; BioLegend), CD8β (YTS156.7.7; BioLegend), and collagen-IV (goat anti-mouse polyclonal; Millipore). We counterstained with DAPI or SYTOX Green (Thermo Fisher Scientific) to detect nuclei. The following secondary antibodies were from Jackson ImmunoResearch: bovine anti-goat (polyclonal) and donkey anti-rat (polyclonal).
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